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Integrating space, place, time and form: the challenge of developing standards for geophylogenies

Integrating space, place, time and form: the challenge of developing standards for geophylogenies. Escher. Flatworm. David M. Kidd Centre for Population Biology, Imperial College London, UK National Evolutionary Synthesis Centre, Durham, North Carolina, USA. d.kidd@imperial.ac.uk.

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Integrating space, place, time and form: the challenge of developing standards for geophylogenies

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  1. Integrating space, place, time and form:the challenge of developing standards for geophylogenies Escher Flatworm David M. Kidd Centre for Population Biology, Imperial College London, UK National Evolutionary Synthesis Centre, Durham, North Carolina, USA. d.kidd@imperial.ac.uk

  2. Encyclopedia of Life Tree of Life Map of Life Form, Time and Space “The affinities of all the beings of the same class have sometimes been represented by a great tree...the…Tree of Life, which fills with its dead and broken branches the crust of the earth, and covers the surface with its ever branching and beautiful ramifications.” Charles Darwin 1859. On the origin of species. Ch. 5 Laws of Variation. “The affinities of all the beings of the same class have sometimes been represented by a great tree...the…Tree of Life, which fills with its dead and broken branches the crust of the earth, and covers the surface with its ever branching and beautiful ramifications.” Charles Darwin 1859. On the origin of species. Ch. 5 Laws of Variation.

  3. Historical Biogeography Workflow Order and location of vicariance events Data Ecology Observations Inference Direct Vicariance Analysis (Hovenkamp) Analysis Ecological Niche Model many ‘Areas of Endemism’ Analysis (PAE, Biotic Elements) Niche Range Phylogeny one Derived Areas Ad-hoc Area Hierarchical Area Relationships Range–Area Matrix one many Cladistic Biogeography LaGrange DIVA Clade History

  4. GeophylogenySpatial network in which topology is defined by a phylogenetic model or classification and the geographical position of inferred nodes and the paths of branches are defined by a biogeographical model

  5. Taxonomic(TNC) Genetic(?) Phylogenetic NexML & PhyloXML Geophylogenies Area Biogeographic ICAN Chronogrametic ? Continental Drift ? Temporal Chronos? Geographic GML Palaeoecological, palaeoclimate & palaeo-sealevel reconstructions ? Ecological EML Integration of Standards Form Space Time Place

  6. GeoPhyloBuilder: • Xianhua Liu • Data: • Constantino Macias-Garcia & Ella Vazquez (UNAM) • Bill Piel (Yale) • John Wiens & Sarah Smith (Stony Brook). • Funding: • NESCent Research Fellowship • NSFb #EF-0423641 • Duke, NC State University & UNC Acknowledgements • http://evoviz.org

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