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The generic G enome Browse r (GBrowse)

Citrus GBrowse. The generic G enome Browse r (GBrowse) A combination database and interactive web page for manipulating and displaying annotations on genomes Developed by GMOD ( Generic Model Organism Database ) Citrus GBrowse : a customized GBrowse for the Citrus genome.

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The generic G enome Browse r (GBrowse)

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  1. Citrus GBrowse The generic Genome Browser (GBrowse) A combination database and interactive web page for manipulating and displaying annotations on genomes Developed by GMOD (Generic Model Organism Database) Citrus GBrowse : a customized GBrowse for the Citrus genome

  2. Citrus GBrowse Overview Description menus Search Bird’s eye view Details Tracks

  3. Citrus GBrowse Search Search by annotation ID, name, or comment Scroll/zoom Hide Details Regiondisplayed (minus-sign) Dropdown list OpenDetails (plus-sign)

  4. Citrus GBrowse Search click

  5. Citrus GBrowse Tracks remove track (cross-sign)

  6. Citrus GBrowse Tracks choose tracks you want to see

  7. Citrus GBrowse Tracks click

  8. Citrus GBrowse Tracks Selecting regions with mouse

  9. Citrus GBrowse Tracks click

  10. Citrus GBrowse Configuring Tracks click Customize your track views

  11. Citrus GBrowse Preferences click “Image Width”

  12. Citrus GBrowse Preferences click edit Highlights the specified region and feature

  13. Citrus GBrowse Reports Download sequences or track data Display settings click click

  14. Citrus GBrowse Reports

  15. Citrus GBrowse – Adding your annotations Upload or import your own annotation files

  16. Citrus GBrowse Tutorial References • http://www.openhelix.com/gbrowse • http://gmod.org/wiki/Gbrowse Acknowledgements • This tutorial was based on the Open Helix GBrowse 1.6 tutorial which was modified for the Citrus genome sequence and annotations implemented in GBrowse 2.0

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