1 / 15

Protein Databases

Protein Databases. EBI – European Bioinformatics Institute http://www.ebi.ac.uk/. What is the difference between dealing with nucleotide DBs and protein DBs?. Name & description. Gene encoded from. Organism. Function . Enzyme? Ligands? PTMs? Interactions?. Biological processes.

gay-morrow
Download Presentation

Protein Databases

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript


  1. Protein Databases EBI – European Bioinformatics Institute http://www.ebi.ac.uk/

  2. What is the difference between dealing with nucleotide DBs and protein DBs?

  3. Name & description. Gene encoded from. Organism. Function. Enzyme? Ligands? PTMs? Interactions? Biological processes. Structure. Sequence. More... Protein information

  4. Protein DBs • Swiss-Prot - manually annotated. • TrEMBL – translated EMBL, automatically annotated. • RefSeq – Reference Sequence for proteins, currated. • UniRef – The UniProt Reference Clusters. • PIR - Protein Information Resource. • PDB – Protein Data Bank – structure.

  5. Databases growth www.genome.jp/en/db_growth.html

  6. Protein Names Different DBs – different accessions

  7. EBI interface

  8. EB-eye search

  9. EB-eye search

  10. NCBI - Entrez

  11. UniProt Knowledgebasea complete annotated protein sequence database

  12. What’s in UniProt? http://beta.uniprot.org/

  13. How is it built?

  14. PIR – Protein Information Resource Integrated Protein Literature, Information and Knowledge Protein Family Classification System Integrated Protein Knowledgebase

More Related