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Desmanthus fruticosus 109-92

Desmanthus fruticosus 109-92. Schleinitzia novoguineensis 57-84. Govindarajulu et al.— American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 1

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Desmanthus fruticosus 109-92

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  1. Desmanthus fruticosus 109-92 Schleinitzia novoguineensis 57-84 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 1 Govindarajulu, Rajanikanth, Colin E. Hughes, Patrick J. Alexander, and C. Donovan Bailey. 2011. The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosoideae). American Journal of Botany 98(12): 2064-2076. 98/90 L cuspidata 89-92 L cuspidata 88-92 L esculenta 48-87-01 </< 88/54 L esculenta 47-87 70/56 L esculenta 216 94/81 91/83 L matudae 49-87 L matudae 2153 </< L pallida 79-92 </< L pallida 122-92 90/56 53/< L pallida 78-92 L pueblana 125-92 </< Appendix S1. Best fitting ML tree derived for each locus. Support values represent 100 ML bootstraps and 1000 parsimony jackknife replicates, respectively. A) cpDNA, B) 23L, C) 28, D) A9, E) PA1213, F) A2, G) A4A5, and F) nrDNA ITS. L pueblana 2140 </< L pueblana 2089 </< 64/< L involucrata 146-91 L involucrata 87-92 L retusa 23-86 100/100 86/95 L retusa 23-09-02 L retusa 23-86-06 92/96 100/100 95/< L greggii 21-86-07 100/99 L greggii 19-86-10 98/98 95/61 L greggii 82-87 L greggii 20-86-02 Appendix S1A. cpDNA ML/Par BOO L diversifolia 126-92 99/59 L diversifolia 81-92 </< L diversifolia 82-92 L diversifolia 83-92 </< </< L pulverulenta 83-87-02 63/< 67/< L leucocephala leucocephala 80-92 50/77 L leucocephala glabrata 84-92 L pulverulenta 1611 </< L leucocephala leucocephala 133-92 </< L leucocephala ixtahuacana 24-91 </< L diversifolia 1666 </< </< L leucocephala glabrata 93-92 </< L pulverulenta 84-87 </< L pulverulenta 1593 </< L leucocephala glabrata 94-92 </< L leucocephala glabrata 136-92 </< </< L leucocephala leucocephala 147-92 L leucocephala leucocephala 103-94-04 99/98 L trichodes 61-88 L trichodes 2-86-07 L collinsii zacapana 18-84 L collinsii collinsii 52-88 </< </< L shannonii 135-92 </< 90 L trichandra 140-92 52/< 100/99 L trichandra 54-88 L trichandra 137-92 56/< L shannonii 53-87 63/< L shannonii 141-92 65/< </< L shannonii 1-91 93/91 L magnifica 19-84 </< L magnifica 58-88-09 L lanceolata lanceolata 46-85 </< L lanceolata lanceolata 90-92 </< L lanceolata lanceolata 44-85 58/< L trichandra 53-88 L lanceolata lanceolata 43-85 61/< 84/52 L collinsii zacapana 56-88 </< L collinsii zacapana 57-88-08 </< </< L confertiflora confertiflora 127-92 L lanceolata lanceolata 913 </< L confertiflora adenotheloidea 1730 </< L trichandra 2121 </< L trichandra 128-92 </< </< 79/< L confertiflora adenotheloidea 1800 L confertiflora adenotheloidea 1801 L collinsii collinsii 51-88 </< L lanceolata sousae 50-87 84/78 L lanceolata sousae 51-87 </< L lanceolata lanceolata 134-92 L macrophylla macrophylla 2076 </< 99/92 L macrophylla macrophylla 55-88 53/< 52/< L macrophylla istmensis 47-85 L lempirana 5-91 69/72 L lempirana 6-91-03 61/< L salvadorensis 7-91 </< L multicapitula 81-87 </< L multicapitula 86-87 71/50 100/< L salvadorensis 17-86 L salvadorensis 34-88

  2. L cuspidata 89-92 L cuspidata 88-92 6 </< L confertiflora adenotheloidea 1801 6B 100/< L confertiflora adenotheloidea 1800 5C </< L confertiflora adenotheloidea 1801 6D </< L con aden 1730 2 + 1731 7 + 2063 2D 100/72 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 2 L confertiflora adenotheloidea 1731 6 L cuspidata 88-92 100/65 L cuspidata 88-92 1 </< L cuspidata 88-92 11 L retusa 23-86 100/100 L retusa 23-90 02 100/96 L greggii 82-87 100/100 L greggii 20-86 02 100/95 L greggii 19-86 10 100/100 </< L greggii 21-86 07 L diversifolia 82-92 05 100/100 Appendix S1B. 23L ML/Par BOO L diversifolia 921 5 </70 L diversifolia 83-92 5 7 100/91 L leuco gla 136-92 1 4 7 9 + 84-92 1 + Lxmix 2054 15b L pulverulenta 1866 2 100/98 L pulverulenta 1593 53/< L pulverulenta 1611 1 76/< 59/< L pulverulenta 1611 2 3 4 100/69 L leucocephala ixtahuacana 117-92 1 7 </< </< L leucocephala glabrata 94-92 3 4 61/< </< L leucocephala glabrata 94-92 01 L leucocephala leucocephala 147-92 6 </< L leucocephala glabrata 93-92 1 4 100/< 100/66 L leucocephala glabrata 93-92 3 </< L leucocephala leucocephala 80-92 9 L pulverulenta 84-87-02 L leuco leuco 133 92 11b </< 52/< L pulverulenta 1866 1 4 </< L leucocephala glabrata 93-92 2 </< </< L leucocephala ixtahuacana 24-91 1 L leucocephala leucocephala 80-92 6 </< L pulverulenta 83-87-02 100/< L leucocephala glabrata 136-92 8 100/< L leucocephala glabrata 84-92 7 100/90 L esculenta 47-87 1 7 100/96 L esculenta 216 + Hybrid 2066 9C 9D </< L esculenta 47-87 8 </< L esculenta 48-87-01 100/< L matudae 49-87 L matudae 2153 </< L pueblana 2140 23b </< 100/51 L pueblana 2089 100/71 </< L pueblana 125 92 66/< L pueblana 2140 23a d L pallida 79-92 6 81/< L pallida 78-92 02 </< L pallida 78-92 03 </< </< L pallida 122-92 3 7 L pallida 122-92 05 L collinsii collinsii 51-88 1 2 3 100/100 L collinsii collinsii 52-88 100/61 L lanceolata sousae 872 L lanceolata lanceolata 913 1 100/99 100/76 L lanceolata lanceolata 913 5 L lanceolata lanceolata 913 4 100/68 75/< L lanceolata lanceolata 134-92 1 2 3 </< L lanceolata lanceolata 913 3 </< L lanceolata lanceolata 43-85 5 </< L lanceolata sousae 51-87 2 3 </< L lanceolata sousae 51-87 1 </< 100/< L lanceolata lanceolata 43-85 2 100/79 100/< L lanceolata lanceolata 43-85 3 </< L leucocephala ixtahuacana 117-92 05 93/< L leucocephala glabrata 84-92 6 100/85 L leucocephala ixtahuacana 24-91 4 </< L leucocephala ixtahuacana 24-91 5 L trichandra 137-92 </< L trichandra 2121 100/< L involucrata 146-91 6 8 100/81 L trichandra 128-92 3 57/< L trichandra 128-92 6 100/62 L diversifolia 81-92 4b 9 100/92 L diversifolia 81-92 2 < L diversifolia 83-92 12 80/< L trichandra 54-88 87/< L trichandra 140-92 L diversifolia 921 1 73/64 100/< L diversifolia 921 4 < L diversifolia 82-92 3 4 91/63 L diversifolia 82-92 02 </< L confertiflora adenotheloidea 1800 5D L confertiflora adenotheloidea 1801 6A </< 100/62 100/< L confertiflora adenotheloidea 1801 6C L confertiflora adenotheloidea 2063 2a </< 100/< L confertiflora adenotheloidea 2063 2b </< L confertiflora adenotheloidea 1730 1 4 5 100/71 100/58 L confertiflora adenotheloidea 1730 3 L confertiflora confertiflora 1152 3 </< L confertiflora confertiflora 1152 2 </< L confertiflora confertiflora 127-92 3 4 5 63 L confertiflora confertiflora 127-92 1 L magnifica 58-88-09 100/91 L lempirana 5-91 </< L lempirana 5-91 1 </< L shannonii 135-92 4 </58 L lempirana 5-91 6 </< 100/92 L lempirana 6-91 03 L trichandra 53-88 100/50 L diversifolia 921 2 100 L diversifolia 82-92 01 100/94 L pallida 78-92 01 </< L pallida 79-92 10 75/< L pallida 79-92 4 + Hybrid 1625 3D 100/65 100/55 L pallida 122-92 01 58/< L pallida 122-92 02 </< L involucrata 146-91 2 7 </< L confertiflora adenotheloidea 1800 5B L lanceolata lanceolata 44-85 L lanceolata lanceolata 90-92 1 2 3 100/< L lanceolata lanceolata 46-85 </< L multicapitula 86-87 100/96 L multicapitula 81-87 6 100/70 100/89 L multicapitula 81-87 1 </< L multicapitula 81-87 12 100/64 L multicapitula 81-87 7 L leucocephala leucocephala 80-92 13 2 </< L leuco gla 93-92 5 + Hybrid 1317 2D </< 79/< 100/70 L leucocephala leucocephala 80-92 4 L leucocephala leucocephala 147-92 3 7 100/63 L leucocephala glabrata 94-92 02 </< L leucocephala glabrata 94-92 05 </< L leucocephala leucocephala 147-92 01 </< L lanceolata lanceolata 134-92 4 6 7 </< </< L leucocephala leucocephala 147-92 04 100/73 L macrophylla macrophylla 1179 L macrophylla istemensis 47-85-07 100/94 L macrophylla macrophylla 2076 L shannonii 1 91 100/78 L shannonii 141-92 </< </< L shannonii 53-87 100/73 L shannonii 135-92 3 100/98 L shannonii 135-92 2 100/< L salvadorensis 34-88 1 2 4 100/64 L salvadorensis 7-91 100/82 L salvadorensis 7-91 2 </< L salvadorensis 7-91 5 8 </< L salvadorensis 17-86 </< L trichodes 2-86 07 100/95 L trichodes 61-88 6 100/100 L trichodes 61-88 3 5 </< 100/55 L trichodes 61-88 7 L magnifica 19-84 10 100/79 L magnifica 19-84 3 6 100/79 L collinsii zacapana 18-84 1 2 3 100/< L collinsii zacapana 57-88-08 100/98 L collinsi zacapana 56-88 05 100/80 L collinsii zacapana 56-88 3 </< L collinsii zacapana 56-88 1

  3. L cuspidata 89-92 L cuspidata 88-92 L confertiflora confertiflora 2051 2 59/< L confertiflora adenotheloidea 2063 9 96/< L confertiflora adenotheloidea 2063 4 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 3 </< L confertiflora adenotheloidea 2063 7 </< L confertiflora confertiflora 2051 8 </< L confertiflora adenotheloidea 2063 10 </< L confertiflora confertiflora 2051 1 4 </< L confertiflora adenotheloidea 1730 2 </< L confertiflora confertiflora 127-92 1 4 L confertiflora adenotheloidea 1730 1 77/< 63/60 L confertiflora adenotheloidea 1730 8 L confertiflora adenotheloidea 1730 5 </< Appendix S1C. 28 ML/Par BOO L confertiflora adenotheloidea 1730 4 L confertiflora confertiflora 127-92 3 L pallida 2165 9 </< 93/77 L involucrata 87-92 10 L involucrata 146-91 2 4 L trichandra 140-92 </< L trichandra 128-92 </< 95/89 </< L trichandra 2121 </< L pallida 122-92 5 </< L pallida 2196 </< L trichandra 53-88 </< L confertiflora confertiflora 2051 6 1 </< L pallida 2212 7 83 89 L pallida 78-92 4 87/66 L pallida 78-92 8 L.pallida 79-92 10 </< 75/61 L salvadorensis 17-86 L salvadorensis 98-90 </< L collinsii collinsii 52-88 63/< L trichandra 137-92 </< L collinsii collinsii 51-88 </< L collinsii zacapana 57-88-08 56/< 86/66 78/< L collinsii zacapana 18 84 65/< L collinsi zacapana 56-88 L salvadorensis 7-91 53/< L lanceolata lanceolata 44-85 98/93 </< L lanceolata 90-92 78/< </< L lanceolata lanceolata 46-85 90/79 L lempirana 5-91 1 8 9 L lempirana 5-91 4 </< L macrophylla istemensis 47-85-07 80/< L macrophylla macrophylla 55-88 54/< </< L trichodes 61-88 79/< L macrophylla 2417 63/< 61/< L macrophylla 2164 L macrophylla 2076 </< L leucocephala glabrata 86-92 1 L multicapitula 86 87 L leucocephala glabrata 84-92 L lanceolata 134-92 61/< </< </< L leucocephala leucocephala 133-92 34/< 62/< L leucocephala glabrata 86-92 6 L leucocephala ixtahuacana 24-91 68/< 79/54 L lanceolata 2166 L leucocephala ixtahuacana 117-92 L trichodes 2-86-07 </< L lempirana 6-91-03 </< 96/94 95 L trichandra 54-88 5 </< L trichandra 54-88 1 14 L shannonii 135-92 </< L multicapitula 81-87 </< </< L shannonii 1 91 </< L magnifica 19-84 </< </< </54 L shannonii 53-87 L shannonii 141-92 L leucocephala glabrata 93-92 1 </< L leucocephala glabrata 94-92 6 </< L leucocephala glabrata 94-92 1 </< L lanceolata 913 56/< </< 57/< L leucocephala glabrata 94-92 4 L leucocephala glabrata 94-92 3 8 56/< L lanceolata lanceolata 43-85 L lanceolata sousae 50-87 </< L leucocephala glabrata 136-92 9 </< </< L lanceolata 51-87 L leucocephala glabrata 136-92 3 7 </< L leucocephala glabrata 136-92 6 </< </< L leucocephala glabrata 136-92 8 L leucocephala glabrata 136-92 2 L greggi 82-87 100/94 L greggii 21-86-07 51/61 L greggii 19-86-10 </< L greggii 20-86-02 </< L retusa 23-86 100/99 75/< L retusa 23-09-02 L retusa 23-86-06 92/< L pulverulenta 83-87-02 68/< </< L pulverulenta 84-87-02 </< L pulverulenta 1611 80/< L pulverulenta 1866 L pulverulenta 2173 </< L leucocephala leucocephala 80-92 </< L pulverulenta 1593 </< 91/81 50/65 L pulverulenta 22-86 L pulverulenta 98-92 L diversifolia 45-87 </< </< L leucocephala glabrata 86-92 5 L diversifolia 921 100/92 L diversifolia 2181 2 L diversifolia 81-92 62/63 </< </< L diversifolia 31-89 3 7 12 </< L diversifolia 2181 1 5 8 a L diversifolia 2181 4 </< 63/56 L diversifolia 2176 8 </< </< L diversifolia 2181 11 L diversifolia 31-89 6 </< L diversifolia 2176 1 2 3 4 </< </< L diversifolia 31-89 11 L diversifolia 31-89 1 L matudae 2153 1 5 </67 L matudae 49-87 6 </< </< L matudae 49-87 4 </< L matudae 49-87 5 </< 75/< L matudae 2153 4 L matudae 49-87 2 L matudae 2148 </< L pallida 2165 1 3 85/69 L pallida 2165 11 </< L pallida 2165 10 </< L pallida 2165 6 97/90 </< 92/< L pallida 79-92 8 L pallida 122-92 4 L matudae 212 91/< L esculenta 2114 7 L esculenta 2114 12 </54 L esculenta 47-87 </< </< L esculenta 2133 </< L esculenta 216 4 5 83/< L esculenta 2103 </< L esculenta 216 1 </< </< L esculenta 216 2 62/< L esculenta 48-87-01 L esculenta 2143 </< L pallida 122-92 6 </< L pallida 122-92 7 </< L pallida 122-92 1 </< L pallida 2212 6 </< 73/< </< L pallida 2212 3 4 5 L pallida 79-92 1 5 50/< L peublana 2077 L esculenta 2088 </< 79/65 L pueblana 125-92 L pueblana 2089 </< L pallida 78-92 1 L pallida 78-92 2 5 </< </< L esculenta 2093 </< </< L peublana 2140 </< L pueblana 2140 79/< L involucrata 146-91 8 L involucrata 146 91 1 64/56 L involucrata 146-91 3 </< L involucrata 1523 4 73/56 </< L involucrata 87-92 1 8 </< L involucrata 1523 1 2 9 </< L involucrata 87-92 7 L involucrata 87-92 4

  4. L cuspidata 89-92 L cuspidata 88-92 53/< Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 4 L confertiflora adenotheloidea 2063 71/59 L confertiflora confertiflora 2051 61/< 100/97 L confertiflora adenotheloidea 1730 21 L confertiflora adenotheloidea 1730 18 19 L retusa 23-86-06 100/100 66/< L retusa 23-86 L retusa 23-09-02 100/99 100/95 L greggii 82-87 100/99 L greggii 20-86-02 Appendix S1D. A9 ML/Par BOO 100/99 L greggii 21-86-07 L greggii 19-86-10 L leucocephala glabrata 93-92 01 60/< </< L leucocephala leucocephala 133-92 2 L leucocephala glabrata 91-92 </< L leucocephala leucocephala 133-92 5 7 </< L leucocephala leucocephala 133-92 3 </< L leucocephala leucocephala 133-92 6 50/< L pulverulenta 1593 100/100 78/62 L leucocephala glabrata 93-92 15C 93/91 < 70/51 L pulverulenta 1866 2 3 L pulverulenta 1611 3 7 90/< L diversifolia 82-92 05 11 L diversifolia 82-92 3 8 </< L leucocephala leucocephala 147-92 1 </< 53/< L leucocephala leucocephala 147-92 2 98/95 L leucocephala ixtahuacana 24-91 7 L leucocephala leucocephala 147-92 3 5 </< L diversifolia 81-92 2 </< L diversifolia 81-92 1 </< 100/100 </< L leucocephala leucocephala 147-92 4 L leucocephala ixtahuacana 24-91 5 L leucocephala ixtahuacana 117-92 16A 87/< L pulverulenta 84-87 A1 93/97 L pulverulenta 83-87-02 3 98/< 62/< L pulverulenta 83-87-02 2 99/81 L pulverulenta 83-87-02 1 </< L leucocephala leucocephala 133-92 06 L leucocephala glabrata 94-92 13 </< L leucocephala glabrata 94-92 23 66/< 100/97 L leucocephala glabrata 94-92 17 </< </< L leucocephala glabrata 94-92 14 L leucocephala glabrata 94-92 15 L leucocephala glabrata 93-92 3 L diversifolia 46-87 3 </< 100/99 87/97 </< L diversifolia 46-87 2 L diversifolia 46-87 5 </< L leucocephala glabrata 93-92 2 </< L leucocephala glabrata 93-92 5 </< </< L diversifolia 46-87 4 </< L leucocephala glabrata 93-92 4 L diversifolia 81-92 3 </< </< L diversifolia 81-92 4 </< L diversifolia 83-92 2 3 </< L diversifolia 81-92 5 L diversifolia 83-92 1 L matudae 49-87 99/95 </< L pallida 78-92 12D L pallida 79-92 11 100/100 L matudae 2153 L esculenta 216 99/99 68/68 L esculenta 47-87 61/< 96/< L matudae 215 85/71 L esculenta 48-87 100/100 L involucrata 87-92 L involucrata 146-91 100/100 68/< L pueblana 2140 9a 87/< L pueblana 125-92 89/< L pueblana 2089 L pallida 122-92 11A L trichandra 53-88 </< 96/85 60/69 L trichandra 128-92 1 L trichandra 128-92 2 5 </< L trichandra 2121 1 2 3 </< </< L pallida 79-92 8 13 </56 L trichandra 137-92 L trichandra 140-92 62/< L trichandra 54-88 1 2 4 5 97/91 100/100 L leucocephala ixtahuacana 24-91 2 L leucocephala ixtahuacana 24-91 3 4 </< 100/100 L shannonii 141-92 5 L shannonii 53-87 60/91 L shannonii 141-92 2 3 4 98/97 78/64 L shannonii 135-92 1 2 5 6 100/100 62/< L shannonii 1-91 L salvadorensis 34-88 5 100/100 95/63 L salvadorensis 7-91 1 2 5 6 L salvadorensis 17-86 73/69 L collinsii zacapana 18-84 6 100/100 L collinsii zacapana 18-84 2 100/99 L collinsii zacapana 56-88 2 L collinsii zacapana 56-88 3 6 97/65 93/80 L lempirana 5-91 L lempirana 6-91-03 L lanceolata lanceolata 46-85-01 </< 100/100 L salvadorensis 34-88 1 L salvadorensis 34-88 4 63/< L multicapitula 81-87 8 100/100 L multicapitula 81 87 03 100/93 </< 76/61 L multicapitula 81 87 01 L multicapitula 81 87 02 L lanceolata lanceolata 44-85 2 87/57 67/53 L lanceolata lanceolata 90-92 4 </< L lanceolata lanceolata 44-85 1 3 83/< 74/59 L lanceolata lanceolata 43-85 L lanceolata 134-92 2 3 55/< L lanceolata sousae 51-87 1 3 99/98 </79 L lanceolata sousae 50-87 </< L lanceolata sousae 51-87 2 L macrophylla istemensis 47-85-07 100/95 L collinsii zacapana 57-88 61/< 77/90 L macrophylla macrophylla 2076 3 </< L macrophylla macrophylla 2076 1 5 99/69 L trichodes 2-86-07 L trichodes 61-88 4 < 97/82 L magnifica 58-88 L magnifica 19-84 86/68 L collinsii collinsii 52-88 98/99 97/< L macrophylla macrophylla 55-88-09 L collinsii collinsii 51-88-05

  5. Desmanthus fruticosus 109-92 13 Desmanthus fruticosus 109-92 8 87/85 Desmanthus fruticosus 109-92 11 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 5 Desmanthus fruticosus 109-92 12 Desmanthus fruticosus 109-92 4 72/94 L cuspidata 89-92 L cuspidata 88-92 93/< L confertiflora confertiflora 127-92 4 57/< L confertiflora adenotheloidea 2063 4 70/76 L confertiflora adenotheloidea 1731 1 </< L confertiflora adenotheloidea 1152 3 </< L confertiflora confertiflora 127-92 3 </< </< L confertiflora adenotheloidea 2063 7 L confertiflora confertiflora 127-92 2 </< Appendix S1E. PA1213 ML/Par BOO </< L confertiflora adenotheloidea 1152 2 </< L confertiflora adenotheloidea 1730 2 </< L confertiflora adenotheloidea 1152 4 84/78 L confertiflora adenotheloidea 2063 2 L pallida 122-92 2 69/< 91/68 69/68 L pueblana 2089 2 L pueblana 2089 1 93/65 92/73 L pueblana 2089 3 L pallida 78-92 4 </< L esculenta 2143 60/< L esculenta 2114 </< L confertiflora adenotheloidea 1800 3 4 </< L pallida 79-92 5 L pueblana 125-92 2 </< 64/60 </< L pueblana 2140 6 </< L pueb 125-92 1 3 L matudae 49-87 </< 92/91 L pallida 79-92 3 </< </< L pallida 79-92 2 </< L pueblana 2140 1 2 </< 100/< L matudae 2153 1 4 L mat 2153 2 70/64 L esculenta 47-87 L esculenta 48-87 100/100 L esculenta 216 2 67/< L esculenta 216 3 </< </< L esculenta 216 4 L esculenta 216 1 L retusa 23-86 99/95 </< 98/< L retusa 23-09-02 L retusa 23-86-06 82/< 52/69 L gregii 82-87 L greggii 21-86-07 100/100 L gregii 19-86 53/< </< 63/< L greggii 20-86-02 L greggii 19-86-10 L diversifolia 46-87 3 5 L diversifolia 46-87 2 97/< L diversifolia 82-92 1 </< L diversifolia 83-92 5 </< L diversifolia 82-92 3 84/73 </< L diversifolia 83-92 3 </< L pulverulenta 1611 3 99/85 L leucocephala glabrata 93-92 4 99/< </< 100/100 L leucocephala glabrata 93-92 3 </< </< L leucocephala glabrata 94-92 3 L leucocephala glabrata 94-92 4 L diversifolia 81-92 2 5 72/60 71 L diversifolia 81-92 3 L diversifolia 81-92 4 </< L pulver 83-87-02 61/< L leucocephala glabrata 136-92 4 </< L pulverulenta 84-87 L leucocephala leucocephala 80-92 3 55/< </< </< L leucocephala glabrata 136-92 3 L leucocephala 133-92 2 </< </< L pulverulenta 1611 2 L pulverulenta 1611 1 </< L pulverulenta 1593 </< </< L leucocephala leucocephala 80-92 4 L leucocephala 133-92 4 85/< L lempirana 5-91 L lempirana 6-91-03 L macrophylla istmensis 47-85-07 </< 68/65 96/80 L macrophylla macrophylla 55-88 L macrophylla macrophylla 2076 </< L lanceolata lanceolata 43-85 1 2 L lanceolata lanceolata 90-92 66/< </< 70/< L lanceolata lanceolata 44-85 L lanceolata lanceolata 46-85 </< 82/< L trichodes 61-88 L trichodes 2-86-07 </< 81/94 L lanceolata 134-92 1 L lanceolata 134-92 2 88/90 L lanceolata sousae 50-87 81/< L lanceolata sousae 51-87 4 5 </< L lanceolata sousae 51-87 1 </< L leucocephala leucocephala 80-92 2 50/< L leucocephala glabrata 94-92 1 </< L lanceolata lanceolata 43-85 3 </< L lanceolata 134-92 3 </< L leucocephala leucocephala 133-92 1 3 5 </< L leucocephala glabrata 93-92 7 </< L leucocephala glabrata 84-92 4 94/97 </< L leucocephala glabrata 93-92 6 </< L lanceolata 913 </< L leucocephala glabrata 93-92 2 </< L leucocephala 136-92 2 </< L leucocephala glabrata 136-92 1 </< 55/< L lanceolata 2180 L leucocephala glabrata 84-92 3 </< L leucocephala leucocephala 80-92 1 82/87 100/99 L leucocephala ixtahuacana 24-91 1 5 L leucocephala ixtahuacana 24-91 2 88/56 L salvadorensis 34-88 L salvadorensis 17-86 </< L shanonii 135-92 63/< L shannonii 141-92 </< </< L shannonii 1 91 4 L shannonii 1 91 7 </< L shannonii 1 91 5 60/< 39/< L salvadorensis 7-91 L shanonii 53-87 L multicapitula 81-87 </< </< L magnifica 19-84 4 L collinsi collinsi 52-88 2 </< 89/< 91/54 L collinsii collinsii 51-88 </< L collinsii zacapana 57-88 L multicapitula 86-87 </< 97/< L collinsi zacapana 18-84 3 L collinsii zacapana 18-84 2 </< L collinsii zacapana 57-88-08 </< </< L collinsii zacapana 56-88 </< 80/82 L magnifica 19-84 5 L magnifica 58-88-09 58/< L confertiflora adenotheloidea 1730 1 L pallida 78-92 2 87/59 L diversifolia 83-92 2 L diversifolia 83-92 1 </< L involucrata 146-91 5 </< L involucrata 146-91 2 </< L involucrata 146-91 1 </< </< L pallida 78-92 1 60/< 60/< L pallida 78-92 5 </< L pallida 78-92 3 L pallida 122-92 3 67/72 </< 55/< L pallida 79-92 6 63/< L pallida 122-92 1 </< L pallida 79-92 1 L pallida 122-92 5 59/64 L trichandra 54-88 L trichandra 140-92 </< L confertiflora confertiflora 127-92 5 </< L confertiflora adenotheloidea 1731 4 </< L trichandra 53-88 L confertiflora adenotheloidea 1152 1 </< </< </< L confertiflora adenotheloidea 1731 3 6 L confertiflora confertiflora 127-92 1 </< L confertiflora adenotheloidea 2063 6 </< </< L confertiflora adenotheloidea 1730 3 </< L confertiflora adenotheloidea 1731 2 L trichandra 137-92 </< L trichandra 2121 </< 52/< L trichandra 128-92 </< L confertiflora adenotheloidea 2063 1 L.conf adeno 1152 7 </< </< L diversifolia 82-92 5 </< L diversifolia 83-92 4 </< L diversifolia 46-87 1 L diversifolia 81-92 1

  6. L cuspidata 89-92 L cuspidata 1580 ori L cuspidata 88-92 L confertiflora confertiflora 127-92 4 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 6 53/< L confertiflora confertiflora 127-92 5 86/87 L confertifora confertiflora 1730 8 </< L confertifora confertiflora 1730 3 L retusa 23-86 84/< 80/< 55/< L retusa 23-09-02 98/89 L retusa 23-86-06 Appendix S1F. A2 ML/Par BOO L greggii 20-86-02 87/54 L greggii 21-86-07 66/< L greggii 19-86 </< </< L greggii 82-87 58/< 98/77 L greggii 19-86-10 L leucocephala leucocephala 80-92 3 L diversifolia 82-92 </< </< 70/89 L pulverulenta 83-87 L pulverulenta 84-87-02 92/83 L pulverulenta 1593 </< L diversifolia 81-92 87/< L diversifolia 83-92 </< L leucocephala ixtahuacana 24-91 6 </< L leucocephala ixtahuacana 24-91 3 72/< </< L leucocephala ixtahuacana 24-91 1 </< L leucocephala ixtahuacana 117-92 2 6 </< L leucocephala glabrata 84-92 4 </< L leucocephala leucocephala 93-92 5 </< L leucocephala leucocephala 133-92 3 68/< L leucocephala glabrata 94-92 2 6 L pallida 79-92 8 L esculenta 47-87 61/< L matudae 49-87 </< L matudae 2153 </< 54/51 L pueblana 125-92 </< L esculenta 216 </< L pallida 78-92 6 </< L pueblana 2089 </< </< L pallida 79-92 5 </< L pallida 79-92 6 </< 66/< L pueblana 2140 L esculenta 2114 L pallida 122-92 1 L pallida 79-92 3 </< L pallida 78-92 1 L pallida 79-92 2 </< L lempirana 5-91 100/93 L lempirana 6-91-03 </< 55/< L trichandra 54-88 L trichandra 53-88 73/< 64/< L trichandra 140-92 69/< L confertifora confertiflora 1730 1 7 </< 51/70 L confertifora confertiflora 1730 4 L confertiflora confertiflora 127-92 1 3 7 </< 57/< L confertiflora adenotheloidea 2063 </< L trichandra 128-92 74/< </< L trichandra 2121 </< L pallida 78-92 5 L pallida 78-92 2 61/< 84/68 L trichandra 137-92 </< L pallida 79-92 1 </< L involucrata 146-91 </< L involucrata 87-92 72/< L pallida 122-92 5 L macrophylla macrophylla 55-88 89/63 L macrophylla macrophylla 2076 94/72 L lanceolata lanceolata 46-85 </< </< L lanceolata lanceolata 90-92 L lanceolata lanceolata 44-85 L collinsii collinsii 51 88 88/89 </< L collinsii collinsii 52-88 65/< L collinsii zacapana 56-88 98/97 L collinsii zacapana 18-84 78/< L collinsii zacapana 57-88 08 </< L shannonii 135-92 L shannonii 141-92 50/< L magnifica 19-84 100/97 </< L magnifica 58-88-09 68/< L shannonii 53-87 88/< L shannonii 1-91 L trichandra 4-91 </< </< L multicapitula 81-87 99/99 80/< L salvadorensis 34-88 L multicapitula 86-87 L trichodes 61-88 </< </< L trichodes 2-86-07 </< L lanceolata lanceolata 134-92 89/< L macrophylla istmensis 47-85-07 L lanceolata sousae 51-87 </< L lanceolata lanceolata 913 </< </< L leucocephala leucocephala 147-92 </< L leucocephala leucocephala 103-94-04 </< L leucocephala ixtahuacana 24-91 7 </< L leucocephala glabrata 93-92 2 7 </< </< L leucocephala ixtahuacana 24-91 2 </< L leucocephala leucocephala 133-92 1 </< 74/< L leucocephala ixtahuacana 117-92 1 L leucocephala glabrata 93-92 1 6 L leucocephala glabrata 136-92 </< 89/55 L lanceolata lanceolata 43-85 L lanceolata sousae 50-87 </< L leucocephala leucocephala 80-92 8 67/< L leucocephala leucocephala 80-92 4 L leucocephala leucocephala 80-92 2 7 57/< 55/< </< L leucocephala glabrata 84-92 8 L leucocephala glabrata 94-92 1 8 </< </< L leucocephala glabrata 84-92 5 </< L leucocephala glabrata 84-92 3 </< L leucocephala glabrata 84-92 1 L leucocephala glabrata 94-92 3

  7. Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 7 L cuspidata 1580 L cuspidata 88-92 L confertiflora adenotheloidea 1801 1 L confertiflora adenotheloidea 1801 2 L confertiflora adenotheloidea 1801 3 </< L cuspidata 89-92 Appendix S1G. A4A5 ML/Par BOO </63 89/< </< L confertiflora adenotheloidea 1152 1 </< L confertiflora adenotheloidea 1152 4 65/< L confertiflora adenotheloidea 1731 L confertiflora adenotheloidea 1152 5 53/< 86/< L confertiflora adenotheloidea 1730 72/< </< L confertiflora adenotheloidea 1152 6 98/80 L confertiflora adenotheloidea 1801 4 95/59 L confertiflora adenotheloidea 1152 3 L confertiflora adenotheloidea 1801 6 L greggii 19-86 73/< 53/< L greggii 82-87 L retusa 23-86 60/< </< L pulverulenta 1611 100/100 L matudae 49-87 4 74/60 </< L matudae 49-87 1 100/100 L matudae 2153 L matudae 49-87 90/< 96/84 L matudae 49-87 2 L matudae 49-87 5 90/65 L esculenta 216 4 100/100 L esculenta 47-87 2 L esculenta 47-87 1 95/57 53/< </< L esculenta 47-87 4 L esculenta 48-87-01 99/89 L esculenta 47-87 3 100/100 L esculenta 48-87 2 3 6 </< 71/< L esculenta 48-87 4 5 L esculenta 48-87 1 79/62 L esculenta 216 3 </< L involucrata 146-91 51/< 67/< L pallida 78-92 100/100 L pallida 122-92 L pueblana 2089 2 72/76 57/< L pueblana 2089 3 99/88 L pueblana 125-92 59/67 60/< L pallida 79-92 L pueblana 2140 L pulverulenta 1593 1 100/100 L pulverulenta 83-87-02 1 60/< L pulverulenta 83-87-02 2 3 </< L pulverulenta 1593 2 </< L pulverulenta 83-87 5 82/< 92/< </< L pulverulenta 83-87-02 2 L pulverulenta 83-87 6 100/100 L pulveulenta 84-87-02 4 L pulverulenta 84-87-02 5 88/86 100/100 L collinsii zacapana 18-84 L collinsii zacapana 56-88 99/98 L trichodes 61-88 L lanceolata lanceolata 46-85 </< 63/< L lanceolata lanceolata 90-92 </< 72/< L lanceolata sousae 51-87 L lanceolata sousae 50-87 95/90 L salvadorensis 17-86 </< </< L multicapitula 81-87 L shannoni 53-87 </< </< L multicapitula 86-87 L lanceolata lanceolata 44-85 </< L shannonii 1-91 63/< L shannoni 141-92 92/82 L salvadorensis 34-88 81/< L salvadorensis 7 91 L shannoni 135-92 </< 65/< </< L lempirana 5 91 L trichandra 140-92 </< L trichandra 137-92 </< 56 L collinsii collinsii 52-88 </< L collinsii zacapana 57-88 L lanceolata lanceolata 134-92 </< L magnifica 19-84 52/52 </< L leucocephala glabrata 84-92 L leucocephala leucocephala 133-92 </< 97/< L leucocephala leucocephala 80-92 L leucocephala glabrata 93-92 </< L leucocephala leucocephala 147-92 </< L trichandra 53-88 </< L leucocephala glabrata 94-92 L lanceolata lanceolata 43-85 </< L diversifolia 82-92 82/< L diversifolia 83-92 </< 58/< </< L diversifolia 81-92 L diversifolia 46-87 </< L magnifica 58-88-09 </< L collinsii collinsii 51-88 </< L leucocephala glabrata 136-92 </< </< L lanceolata lanceolata 913 </< L leucocephala ixtahuacana 24-91 </< L macrophylla macrophylla 2076 91/78 L trichandra 2121 L macrophylla istmensis 47-85 07 59/56 </< L macrophylla macrophylla 55-88 L trichandra 128-92

  8. Desmanthus fruticosus 109-92 Schleinitzia novoguineensis 57-84 L pallida 78-92 2b 96/96 Govindarajulu et al.—American Journal of Botany 98(12): 2064-2076. 2011. – Data Supplement S1 –page 8 L pallida 122-92 4b </< 91/64 L involucrata 146-91 1b L trichandra 140-92 </< L involucrata 1523 2a 93/90 66/77 L involucrata 146-91 1a L involucrata 87-92 3b 93/100 73/67 L pallida 122-92 4a L pallida 79-92 3 73/60 82/55 L pallida 44-87 1 76/< L esculenta 47-87 1 Appendix S1H. ITS ML/Par BOO L matudae 49-87 </< 73/60 L pallida 78-92 2a L pueblana 125-92 1 L leucocephala ixtahuacana 117-92 1b 100/89 L lanceolata lanceolata 43-85 small 95/99 100/100 L lanceolata lanceolata 43-85 01 </< L lanceolata lanceolata 43-85 02 100/100 L collinsii collinsii 51-88-05 1 2 L collinsii collinsii 51-88-05 3 </< 100/100 L trichandra 54-88 56/< L salvadorensis 17-86 L confertiflora adenotheloidea 1730 1b 99/76 99/100 L magnifica 58-88 < L lempirana 6-91 03 L salvadorensis 34-88 L trichodes 61-88 01 100/100 80/< L leucocephala leucocephala 80-92 1a </< L leucocephala ixtahuacana 24-91 2b L leucocephala glabrata 84-92 5c 67/53 </< 62/< L lanceolata lanceolata 913 6a </< L lanceolata sousae 50-87 01 </< L leucocephala glabrata 136-92 7 100/100 L leucocephala leucocephala 147-92 3b 56/< 64/< L leucocephala leucocephala 80-92 1c 60/< L leucocephala glabrata 136-92 2 </< L lanceolata lanceolata 134-92 02 100/89 L lanceolata sousae 51-87 72/51 L lanceolata lanceolata 134-92 03 93/89 69/< L lanceolata lanceolata 134-92 small L lanceolata lanceolata 134-92 01 L lempirana 5-91 02 L confertiflora confertiflora 127-92 1c </< L confertiflora confertiflora 1152 2b </< L confertiflora adenotheloidea 120-92 2a </< </< </< L confertiflora confertiflora 1510 3b L confertiflora confertiflora 127-92 1b L multicapitula 81-87 02 </< </< L macrophylla macrophylla 55-88 </< L macrophylla istmensis 47-85 02 L lanceolata lanceolata 90-92 05 </< 62/< </< 62/< L lanceolata lanceolata 44-85 04 </< L lanceolata lanceolata 46-85 01 L magnifica 19-84 01 </< 100/99 L magnifica 58-88 02 66/< </< L collinsii zacapana 18-84 L collinsii zacapana 56-88 L trichandra 137-92 01 L trichandra 128-92 03 </< </< L collinsii collinsii 52-88 </< </< L collinsii zacapana 57-88 </< L trichandra 53-88 04 55/< L salvadorensis 7-91 05 L shannonii 1-91 03 </< L shannonii 53-87 01 </< L shannonii 135-92 02 95/59 77/< L shannonii 141-92 05 L shannonii 26-84 4a L involucrata 87-92 3a </< 100/100 L esculenta 216 rev L esculenta 48-87-01 3 </< L pallida 122-92 4c 100/54 </< L esculenta 48-87-01 1 2 </< L matudae 2153 99/82 L pueblana 2089 L pueblana 2089 1 3 52/< L confertiflora confertiflora 1510 3a 100/99 L confertiflora adenotheloidea 120-92 2b </< 100/65 L cuspidata 89-92 L cuspidata 88-92 L retusa 23-86 </< 100/< L confertiflora adenotheloidea 1730 1a </< L confertiflora confertiflora 1152 2a L greggii 19-86 10 96/100 L greggii 82-97 73/94 79/< L greggii 21-86 07 </< </< L greggii 20-86 02 L leucocephala glabrata 136-92 5 94/76 L leucocephala glabrata 93-92 4b 63/< 88/83 L leucocephala glabrata 121-92 6a L pulverulenta 1593 3a 94/< 89/82 L pulverulenta 84-87 06 90/90 L leucocephala ixtahuacana 117-92 1a L diversifolia 83-92 4a 67/< </< L diversifolia 81-92 3a </< L diversifolia 46-87 8a </< L diversifolia 82-92 9a </< </< L diversifolia 146-92 1a L diversifolia 31-89 6a 100/100 L confertiflora confertiflora 127-92 1a L confertiflora adenotheloidea 2063 7 L lanceolata lanceolata 43-85 9LF 100/100 L lanceolata lanceolata 134-92 10LF </< 89/100 92/< L lanceolata lanceolata 134-92 14LF 98/100 L lanceolata lanceolata 134-92 12LR L lanceolata lanceolata 134-92 14 L 96/78 99/96 L lanceolata lanceolata 43-85 Lar </< L lanceolata lanceolata 134-92 lar 100/100 L leucocephala leucocephala 147-92 3a 69/< L leucocephala glabrata 93-92 4a L leucocephala glabrata 136-92 1 4 L leucocephala glabrata 84-92 5a 79/96 </< L pulverulenta 22-86 2b 52/< L leucocephala ixtahuacana 24-91 2a 91/62 60/< L leucocephala leucocephala 80-92 1b L leucocephala glabrata 91-92 2a 100/100 99/99 L pulverulenta 1611 1a </< L leucocephala glabrata 121-92 6b 86/78 L pulverulenta 22-86 2a 97/100 L leucocephala glabrata 84-92 5b L leucocephala glabrata 91-92 2b </< 62/63 L pulverulenta 1866 5a </< L leucocephala glabrata 85-92 8a 89/94 L.pulverulenta 83-87-02 L leucocephala leucocephala 103-94-04

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