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Intro to Bioperl

Intro to Bioperl. allenday@ucla.edu 2005.09.06. Resources. There is already a lot of documentation available online. I’ll be using the online docs, because that’s what you’ll need to do when you get stuck. http://www.bioperl.org Bioperl tutorial Bioperl module documentation

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Intro to Bioperl

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  1. Intro to Bioperl allenday@ucla.edu 2005.09.06

  2. Resources • There is already a lot of documentation available online. • I’ll be using the online docs, because that’s what you’ll need to do when you get stuck.

  3. http://www.bioperl.org • Bioperl tutorial • Bioperl module documentation • Bioperl CVS access

  4. Bioperl tutorial • I.2 • III.2 - III.10

  5. Bioperl scripts • In a CVS or tar.gz download, in the “scripts/” directory. • Scripts are installed to /usr/bin • /usr/bin/bp_seqconvert.pl • /usr/bin/perl -MBio::Perl -e1 • /usr/bin/bp_search2gff.pl • /usr/bin/bp_feature_draw.pl

  6. Module Internals • Bio::SeqIO • Bio::DB::Biblio::eutils

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