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MATRIX_DATA -> use to create pssm matrix Columns: protein id ? base (ATGC) position

JASPAR’s CORE DB has 5 tables . the 5 tables are associated by the first column, but I’m not sure whether it means a protein. next page for detail. MATRIX_DATA -> use to create pssm matrix Columns: protein id ? base (ATGC) position the count of nucleotide at this position.

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MATRIX_DATA -> use to create pssm matrix Columns: protein id ? base (ATGC) position

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  1. JASPAR’s CORE DB has 5 tables.the 5 tables are associated by the first column, but I’m not sure whether it means a protein. next page for detail

  2. MATRIX_DATA -> use to create pssm matrix Columns: protein id ? base (ATGC) position the count of nucleotide at this position

  3. MATRIX_PROTEIN -> get protein name Columns: protein id ? protein accession

  4. MATRIX_SPECIES -> get spexies name Columns: protein id ? NCBI species tax id

  5. MATRIX -> get protein imformation Columns: protein id "CORE" or "collection" DB motif id (MA0001) DB motif edition protein generated gene symbol And here the gene symbol is a little strange.

  6. MATRIX_ANNOTATION Columns: protein id protein attribute's name protein attribute's value

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