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JN632596.1 Antidorcas marsupialis - SA

JN632596.1 Antidorcas marsupialis - SA . 10 Antidorcas marsupialis. 102 Antidorcas marsupialis. 118 Antidorcas marsupialis. Spring-05-NZG. 60 Antidorcas marsupialis. 50 Antidorcas marsupialis. Spring-08-NZG. Antilopini . 21 Antidorcas marsupialis. 99.

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JN632596.1 Antidorcas marsupialis - SA

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  1. JN632596.1 Antidorcas marsupialis - SA 10 Antidorcas marsupialis 102 Antidorcas marsupialis 118 Antidorcas marsupialis Spring-05-NZG 60 Antidorcas marsupialis 50 Antidorcas marsupialis Spring-08-NZG Antilopini 21 Antidorcas marsupialis 99 11 Antidorcas marsupialis 51Struthio camelus Spring-10-NZG 124 Antidorcas marsupialis 46 JN632637.1 Gazella dorcas - Ma JN632653.1 Litocranius walleri - So JN632680.1 Ourebia ourebi - SA JN632693.1 Raphicerus campestris - SA HQ603141.1 Aepyceros melampus - Tan JN632592.1 Aepyceros melampus - Tan 52Antidorcas marsupialis HQ603136.1 Aepyceros melampus - Tan HQ603137.1 Aepyceros melampus - Tan HQ603134.1 Aepyceros melampus - Tan HQ603135.1 Aepyceros melampus - Tan 62 100 Aepycerotini HQ603143.1 Aepyceros melampus - Tan HQ603142.1 Aepyceros melampus - Tan HQ603140.1 Aepyceros melampus - Tan HQ603138.1 Aepyceros melampus - Tan 84Antidorcas marsupialis 46 Aepyceros melampus 97 Aepyceros melampus 96Oryx gazella 64 A15Oryx gazella JN632668.1 Neotragusbatesi - Cam Neotragini 88 JN632669.1 Neotragusmoschatus - Tan 100 V00654-Bos taurus 0.02 • Supplementary Figure 1a.

  2. 80 Aepyceros melampus D. pygarguspygargus 002-NZG FJ207530.1 Damaliscus pygargus AF036287.1 Damaliscus pygargus 63 D. pygargus phillipsi 016-NZG 19 Oryx gazella 89 D. pygargus pygargus 095-NZG 88 D. pygargus pygargus 003-NZG 50 AF016639.1 Damaliscus pygargus AF028821.1 Damaliscus lunatus AF016635.1 Damaliscus lunatus 53 HM209247.1 Connochaetes taurinus - E Africa HM209246.1 Connochaetes taurinus - E Africa FJ785393.1Connochaetes taurinus - E Africa AF034969.1 Connochaetes taurinus 97 FJ785394.1Connochaetes taurinus - E Africa DQ470801.1 Connochaetes taurinus - E Africa DQ470802.1 Connochaetes taurinus - E Africa JN632628.1 Connochaetes taurinus - Tan AF016638.1 Connochaetes taurinus 99 44Antidorcas marsupialis 66 121Tragelaphus oryx JN632627.1 Connochaetes taurinus - SA 76Oryx gazella A5 Antidorcas marsupialis 84 70Antidorcas marsupialis 34-FAntidorcas marsupialis 72 JN632626.1 Connochaetes gnou -SA A12 Struthio camelus AF016637.1 Connochaetes gnou AF300932.1 Alcelaphus buselaphuscaama- SA 61 40Antidorcas marsupialis (**) 41Tragelaphus strepsiceros 62 2Tragelaphus strepsiceros 61 54 AF016640.1 Alcelaphus buselaphus AF016636.1 Alcelaphus lichtensteini AF034967.1 Sigmoceros lichtensteinii JN632594.1 Alcelaphus buselaphus lichtensteinii 78 AF3009421.1Alcelaphus buselaphusmajor - Gui 100 AF300942.1 Alcelaphusbuselaphus major- Cam AF300936.1 Alcelaphus buselaphus swaynei 81 AF300937.1 Alcelaphus buselaphus swaynei AF300940.1 Alcelaphus buselaphustora - Aby AF300938.1 Alcelaphus buselaphus swaynei JN632593.1 Alcelaphus buselaphus AF300939.1 Alcelaphus buselaphus cokei - Uga AF300933.1 Alcelaphus buselaphus lelwel - Uga FJ785383.1 Alcelaphus buselaphus AF300935.1 Alcelaphus buselaphus lelwel - Chad 66 DQ470785.1 Alcelaphus buselaphus FJ785382.1 Alcelaphus buselaphus AF300934.1 Alcelaphus buselaphus lelwel - Uga DQ470784.1 Alcelaphus buselaphus V00654 Bos taurus 0.02 • Supplementary Figure 1b.

  3. D. pygargus phillipsi-019-NZG D. pygargus phillipsi -017-NZG D. pygargus phillipsi -012-NZG FJ207530.1 Damaliscus pygargus 145Damaliscus pygargus phillipsi D. pygargus phillipsi -016-NZG 99 D. pygargus pygargus 02-NZG 19Oryx gazella D. pygargus pygargus -01-NZG 80 Aepyceros melampus 58 D. pygargus pygargus -03-NZG D. pygargus pygargus -107-NZG 62 D. pygargus pygargus -095-NZG HQ603152.1 Damaliscus lunatus HQ603150.1 Damaliscus lunatus 100 HQ603151.1 Damaliscus lunatus 86 41Tragelaphus strepsiceros 77 40Antidorcas marsupialis 73 2 Tragelaphus strepsiceros 92 JN632594.1 Alcelaphus buselaphus lichtensteinii 71-10Tragelaphus strepsiceros JN632593.1 Alcelaphus buselaphus buselaphus HQ603087.1 Alcelaphus buselaphus - Tan 98 HQ603089.1 Alcelaphus buselaphus - Tan HQ603090.1 Alcelaphus buselaphus - Tan HQ603088.1 Alcelaphus buselaphus - Tan HQ603091.1 Alcelaphus buselaphus - Tan HQ603110.1 Connochaetes taurinus - Tan HQ603122.1 Connochaetes taurinus - Tan HQ603116.1 Connochaetes taurinus - Tan HQ603121.1 Connochaetes taurinus - Tan HQ603119.1 Connochaetes taurinus - Tan HQ603111.1 Connochaetes taurinus - Tan HQ603114.1 Connochaetes taurinus - Tan HQ603113.1 Connochaetes taurinus - Tan 65 HQ603115.1 Connochaetes taurinus - Tan HQ603112.1 Connochaetes taurinus - Tan |HQ603117.1 Connochaetes taurinus - Tan JN632628.1 Connochaetes taurinus - Tan HQ603120.1 Connochaetes taurinus - Tan 66 HQ603109.1 Connochaetes taurinus - Tan HQ603118.1 Connochaetes taurinus - Tan 89 Connochaetes taurinus -192-NZG JN632626.1 Connochaetes gnou -SA 70Antidorcas marsupialis 50 55 A12Struthio camelus Connochaetes gnou -171-NZG Connochaetes taurinus -191-NZG 64 Connochaetes gnou -174-NZG Connochaetes taurinus -188-NZG 99 JQ690393.1 Connochaetes taurinus -Zam 121 Tragelaphus oryx 44 Antidorcas marsupialis 73 JN632627.1 Connochaetes taurinus -SA A5Antidorcas marsupialis V00654 Bos taurus 0.02 • Supplementary Figure 1c. 76Oryx gazella

  4. NC_001941 Ovis aries HM236176.1 Ovis aries 74 Antidorcas marsupialis 55 112 Struthio camelus 14 Struthio camelus 68 Antidorcas marsupialis 79 HM236175.1 Ovis aries 82e Struthio camelus 98 Tragelaphus strepsiceros 1 Tragelaphus strepsiceros HM236188.1 Ovis ammon FJ207522.1 Ammotragus lervia FJ207538.1 Rupicapra pyrenaica FJ207526.1 Capra ibex GU068049.1 Capra hircus 100 NC_007441.1 Pantholops hodgsonii FJ207533.1 Capricornis crispus V00654-Bos taurus 67 0.01 • Supplementary Figure 1d.

  5. 95 JN632606.1 Bos javanicus JN632602.1 Bison bonasus EF536353.1 Syncerus caffer 100 JQ235508.1 Syncerus caffer EF536351.1 Bubalus depressicornis 62 JN632607.1 Bubalus bubalis 99 NC_001640Equus caballus 0.02 • Supplementary Figure 1e. • NC_005863, V00654, AF492351 Bostaurus • AF492350, EU177868, NC_005971 Bosindicus 14 samples labeled “beef” 40 Game samples

  6. 7 Struthio camelus • 101 Tragelaphus oryx 54 • 6 Tragelaphus strepsiceros 51 • 54 Tragelaphus strepsiceros 64 78 Antidorcas marsupialis 64 • 8 Tragelaphus strepsiceros • AF030269Tragelaphus strepsiceros 70 48 Oryx gazella • 36 Oryx gazella 72-1 Game 98 92 • 33 Antidorcas marsupialis • 110 Tragelaphus strepsiceros • 22-1 Tragelaphus strepsiceros • 25Antidorcas marsupialis 91 HQ641313 Tragelaphus strepsiceros - Tan 61 • HQ641312 Tragelaphus strepsiceros - Tan • JN632708Tragelaphus strepsiceros - Tan • AF022063 Tragelaphus strepsiceros - Tan • AF036280 Tragelaphus strepsiceros - Tan 50 13 Oryx gazella L13794Bubalus depressicornis (*) L13793 Bubalus depressicornis (*) 83 • FJ785379 Tragelaphus oryx - E Africa • FJ785378Tragelaphus oryx - E Africa JN632704Tragelaphus oryx -Tan 68 AF036278 Tragelaphus oryx AF022057 Tragelaphus oryx • 18 Tragelaphus oryx 64 91 • A13Antidorcas marsupialis • A11 Tragelaphus strepsiceros AF030266 Tragelaphus oryx • 77Tragelaphus strepsiceros • 99 Tragelaphus strepsiceros 84 97 Tragelaphus euryceros Tragelaphus spekii 80 Tragelaphus buxtoni 99 146 Tragelaphus scriptus 58 51 AF022067 Tragelaphus scriptus 98 JN632706 Tragelaphus scriptus -SA AF030267 Tragelaphus scriptus 98 JN632707 Tragelaphus scriptus - Tan 51 96 AF036277 Tragelaphus scriptus FJ785374 Tragelaphus scriptus - Tan 67 HQ641317 Tragelaphus scriptus - Tan 78 HQ641318 Tragelaphus scriptus - Tan 93 Taurotragus derbianus 99 EF536356 Tragelaphus imberbis 99 DQ470778 Tragelaphus imberbis JN632705 Tragelaphus scriptus - Cam HQ450809 Tragelaphus scriptus - Niga 96 AF022066 Tragelaphus angasii JN632702 Tragelaphus angasii - SA 99 AF091633 Tragelaphus angasii 96 • 66Connochaetes taurinus V00654 Bostaurus 0.01 Supplementary Figure 1f.

  7. JN632708 Tragelaphus strepsiceros - Tan HQ603162.1 Tragelaphus strepsiceros -Tan HQ603161 Tragelaphus strepsiceros - Tan 97 48Oryx gazella • 13Oryx gazella 25 Antidorcas marsupialis 74 98 33 Antidorcas marsupialis 89 91 36 Oryx gazella • 110 Tragelaphus strepsiceros 101Tragelaphus oryx 75 • 8 Tragelaphus strepsiceros • 6 Tragelaphus strepsiceros 7 Struthio camelus • 54 Tragelaphus strepsiceros • 78 Antidorcas marsupialis • A13 Antidorcas marsupialis • A11 Tragelaphus strepsiceros • 77Tragelaphus strepsiceros 98 18 Tragelaphus oryx JQ690384 Tragelaphus oryx - Zam • 99 Tragelaphus strepsiceros 88 Tragelaphus oryx-NZG HQ603169Tragelaphus oryx - Tan HQ603170 Tragelaphus oryx - Tan HQ603174 Tragelaphus oryx - Tan 70 JN632704 Tragelaphus oryx - Tan 95 HQ 603173 Tragelaphus oryx - Tan HQ603171 Tragelaphus oryx - Tan HQ603172 Tragelaphus oryx - Tan EF536354 Taurotragus derbianus EF536357 Tragelaphus spekii 93 HQ644120 Tragelaphus spekii EU623454 Tragelaphus eurycerus JN632703 Tragelaphus eurycerus 99 EF536356 Tragelaphus imberbis JQ690389 Tragelaphus scriptus sylvaticus HQ603157 Tragelaphus scriptus 98 JN645579 Tragelaphus scriptus JN632707 Tragelaphus scriptus - Tan 67 JN632706 Tragelaphus scriptus - SA 57 146 Damaliscus pygargus phillipsii 93 JN632705 Tragelaphus scriptus - Cam JN632702 Tragelaphus angasii 61 66 Connochaetes taurinus 100 Nyala10662-NZG V00654Bostaurus 0.02 Supplementary Figure 1g.

  8. 20 Antidorcas marsupialis JN869312.1 Oryx gazella -SA 9 Tragelaphus strepsiceros NC_016422.1 Oryx gazella -SA 72-fat Game AF249973.1 Oryx gazella 55 Oryx gazella 24-1F Oryx gazella JN632678.1 Oryx gazella 4 Game 109Antidorcas marsupialis 110-fatTragelaphus strepsiceros (**) AF249973.1 Oryx gazella 87Tragelaphus strepsiceros A2 Tragelaphus strepsiceros 71-1Tragelaphus strepsiceros 26Tragelaphus strepsiceros 120 Tragelaphus oryx 65 Oryx gazella 122-1Tragelaphus strepsiceros 42Tragelaphus oryx 117 Oryx gazella 12Tragelaphus oryx 69Tragelaphus strepsiceros 123 Oryx gazella 17Tragelaphus strepsiceros 103Tragelaphus strepsiceros JN632648.1 Hippotragus niger JN632647.1 Hippotragus equinus JN632591.1 Addax nasomaculatus(**) 100 JN869311.1 Oryx dammah(*) FJ937660.1 Oryx leucoryx 100 AF036286.1 Oryx leucoryx JN632679.1 Oryx leucoryx 3 AJ222685.1 Oryx dammah JN632677.1 Oryx dammah 99 Oryx beisa 42 V00654 Bos taurus 0.02 • Supplementary Figure 1h.

  9. 42 Tragelaphus oryx 103 Tragelaphus strepsiceros JF444372.1 Oryx gazella JN869312.1 Oryx gazella - SA 117 Oryx gazella 123 Oryx gazella JN632678.1 Oryx gazella 17 Tragelaphus strepsiceros NC_016422.1 Oryx gazella - SA 4 Game • JX436995 Oryx gazella NZG 87 Tragelaphus strepsiceros 69Tragelaphus strepsiceros 71-1Tragelaphus strepsiceros 26Tragelaphus strepsiceros 65 Oryx gazella JF444372.1 Oryx gazella 12Tragelaphus oryx 120Tragelaphus oryx 109 Antidorcas marsupialis 99 122 Tragelaphus strepsiceros 9 Tragelaphus strepsiceros 20Antidorcas marsupialis 55 Oryx gazella 98 24-1Antidorcas marsupialis 72 Game A2Tragelaphus strepsiceros JN869311.1 Oryx dammah(*) 100 JN632591.1 Addax nasomaculatus JN632676.1 Oryx beisa 61 JN632679.1 Oryx leucoryx -Sau 53 JN632677.1 Oryx dammah 79 99 JF444371.1 Oryx dammah JN632648.1 Hippotragus niger 83 JN632647.1 Hippotragus equinus V00654 Bos taurus 0.02 • Supplementary Figure 1i.

  10. AF096625.1 Kobus ellipsiprymnus defassa 64 Tragelaphus strepsiceros 90 AY534347.1 Kobus ellipsiprymnus - Ken 52 AF096624.1 Kobus ellipsiprymnus ellipsiprymus JN632651.1 Kobus ellipsiprymnus defassa - Niger 84 95 DQ470800.1 Kobus ellipsiprymnus - Ken HQ641319.1 Kobus ellipsiprymnus - Tan AF022059.1 Kobus ellipsiprymnus AF052940.1 Kobus kob 87 AF052939.1 Kobus kob 92 AF096619.1 Kobus vardoni 98 AF096620.1 Kobus megaceros AJ222686.1 Kobus megaceros AF096621.1 Kobus leche smithemani 95 AF096623.1 Kobus lecheleche 62 JN632652.1 Kobus leche AF096622.1 Kobus lechekafue JN632684.1 Pelea capreolus - SA 68 AF022055.1 Pelea capreolus JN632694.1 Redunca arundinum - SA 97 81 AF096628.1 Redunca arundinum AF096626.1 Redunca redunca 69 AF096627.1 Redunca fulvorufula 97 AF036284.1 Redunca fulvorufula 96 JN632695.1 Reduncafulvorufula - Tan V00654 Bos taurus 0.02 Supplementary Figure 1j.

  11. 64 Tragelaphus strepsiceros 86 69 34F Antidorcas marsupislis JQ690391.1 Kobus ellipsiprymnus -Zam 53 HQ603158.1 Kobus ellipsiprymnus - Tan 94 86 HQ603159.1 Kobus ellipsiprymnus - Tan • JN632651.1 K. ellipsiprymnus defassa - Niger HQ603160.1 Kobus ellipsiprymnus - Tan 80 JQ690387.1 Kobus lechekafuensis JN632652. Kobus leche 100 94 JQ690383.1 Kobusvardonii - Zam 99 JQ690383.1 Kobusvardonii - Zam JN632694.1 Reduncaarundinum - SA 90 JN632695.1 Reduncafulvorufula - Tan JN632684.1 Pelea capreolus - SA V00654 Bos taurus 0.01 • Supplementary Figure 1k.

  12. FJ785376.1 Sylvicapra grimmia-E Africa • DQ470780.1 Sylvicapra grimmia-E Africa 68 FJ785377.1 Sylvicapra grimmia - E Africa • DQ470779.1 Sylvicapra grimmia- E Africa 96 AF153905.1 Sylvicapra grimmia - CAR 89 JN632701.1 Sylvicapra grimmia - CAR 90 53 Antidorcas marsupialis AF153904.1 Sylvicapra grimmia - Zim AJ222684.1 Cephalophus leucogaster 85 Philatombamawellii 72 51 Philatombamonticola AF153888.1 Cephalophus jentinki 56 JN632616.1 Cephalophus jentinki 72 C. dorsalis 58 60 C. silvicultor 93 88 C. spadix AF153903.1 Cephalophus zebra 58 C. callipygus 59 AF153897.1 Cephalophus ogilbyi JN632620.1 Cephalophus ogilbyi 54 JN632612.1 Cephalophus callipygus 55 AF153895.1 Cephalophus niger AF153900.1 Cephalophus rubidus 99 C. leucogaster AF153902.1 Cephalophus weynsi 74 C. nigrifons 77 74 C. rufilatus 94 51 C. natalensis 69 C. harveyi 57 C. adersi 100 V00654 Bos taurus 0.02 • Supplementary Figure 1l.

  13. JN632701.1 Sylvicapra grimmia -CAR 99 81 HQ644119.1 Sylvicapra grimmia - Tan 99 HQ644118.1 Sylvicapra grimmia • 53 Antidorcas marsupialis (**) 64 99 Cephalophus jentinki 84 Cephalophus silvicultor 96 59 Cephalophus spadix 97 61 HQ644119.1 Cephalophus dorsalis 99 80 Cephalophus dorsalis 88 Cephalophus nigrifrons HQ644107.1 Cephalophus nigrifrons JN632619.1 Cephalophus nigrifrons 62 99 • Cephalophusrufilatus 94 HQ644110.1 Cephalophus rufilatus 79 HQ644093.1 Cephalophus harveyi 98 93 • Cephalophus natalensis 99 • Cephalophusleucogaster 56 • Cephalophusniger 62 • Cephalophus callipygus(1) 78 JN632620.1 Cephalophus ogilbyi GQ144496.1 Cephalophuscallipygus 99 89 JN632613.1 Cephalophus callipygus 57 HQ644116.1 Cephalophus weynsi 87 C. callipygus (2) • HQ644109.1 C. ogilbyi (***) 67 99 Cephalophus adersi HQ644117.1 Cephalophus zebra 99 Philatombamonticola (1) 90 C. monticola (2) 99 P. maxwellii 99 V00654 Bos taurus 0.02 • Supplementary Figure 1m.

  14. Giraffa camelopardalis rothschildi, G.c reticulata (1) 61 49 Giraffa camelopardalis peralta (2) 63 74 Giraffa camelopardalis antiquorum(3) 96 Giraffa camelopardalis reticulata (4) 73 EU088321.1 Giraffa camelopardalis reticulata 53 Giraffa camelopardalis, G.c. tippelskirschi(5) 100 G. camelopardalis, G. c. tippelskirschi, 58 75 (6) G.c. giraffe, G.c. rothschildi Giraffa camelopardalis giraffa, (7) G. c. angolensis, 114 Tragelaphus strepsiceros JN632674.1 Okapia johnstoni 68 100 Okapiajohnstoni(8) V00654 Bos taurus 0.01 • Supplementary Figure 1n.

  15. 80 Susbarbatus(1) Susverrucosus(2) AY534298.1 Sus celebensis (*) 67 AY534299.1 Potamochoerus porcus (*) 69 AY534300.1 Potamochoerus larvatus (*) 57 99 Sus scrofa (3), 73 Struthio camelus 99 78 Sus celebensis(4) AY920905.1 Sus philippensis AY920906.1 Sus cebifrons JN632688.1 Potamochoerus porcus 100 78 96 DQ315602.1 Potamochoerus porcus GQ338966.1 Potamochoerus larvatus AJ314549.1 Phacochoerus aethiopicus 99 AJ314549.1 Phacochoerus aethiopicus AJ314550.1 Phacochoerus aethiopicus 100 AJ314551.1 Phacochoerusaethiopicus 100 AJ314551.1 Phacochoerus aethiopicus GQ338968.1 Hylochoerus meinertzhageni 55 100 AY534301.1 Phacochoerus africanus 99 GQ338969.1 Phacochoerus africanus 93 AJ314547.1 Phacochoerus africanus - Tan 94 • Z50090.1 Phacochoerus africanus 99 AJ314548.1 Phacochoerus africanus - Ken 86 DQ409327.1 Phacochoerus africanus 47 Phacochoerusafricanus 49 Phacochoerus africanus GQ338970.1 Babyrousa babyrussa 100 AY534302.1 Babyrousababyrussa JN632682.1 Pecari tajacu V000654 Bos taurus 0.02 • Supplementary Figure 1o.

  16. FJ785392 Equus burchellii DQ470805 Equus burchellii FJ785391 Equus burchellii 91 JX312721 Equus burchellii quagga AY534349 Equus burchellii JX312733Equus burchellii quagga JX312729Equus burchellii quagga 53 DQ470804 Equus burchellii 45Tragelaphus strepsiceros Equus burchellii JF718888 Equus burchellii 80 • A4 Tragelaphus strepsiceros JX567002 Equus burchellii 84 JX567003 Equus burchellii JX312720Equus grevyi X56282 Equus grevyi 54 JF718890 Equus grevyi 95 93 Equus asinus • JX566998 Equus zebra MZNP - SA JF718889 Equus zebra 77 JX312719 Equus zebra hartmannae JX312718 Equus zebra 98 JX312717 Equus zebra 27 Zebra JF718887 Equus hemionus onager JF718885 Equus kiang 94 JX312728 Equus hemionus kulan 94 87 JF718886 Equus hemionus kulan JN398440 Equus caballus NC001640 Equus caballus JN398385 Equus caballus 96 JN398399 Equus caballus 98Antidorcas marsupialis 57 JN398455 Equus caballus JF718883 Equus przewalskii JN398403 Equus przewalskii 62 JN398402 Equus przewalskii JN398405 Equus caballus V00654 Bostaurus 0.02 • Supplementary Figure 1p.

  17. JX566995 Equus burchellii - SA JX436996 Equus burchellii - SA JX566994 Equus burchellii - SA JX312733 Equus burchellii quagga 97 A4Tragelaphus strepsiceros JX312729 Equus burchellii quagga 98 45Tragelaphus strepsiceros JQ690388 Equus burchellii 67 81 JX312721 Equus burchellii quagga EF568640 Equus grevyi 84 EF568729 Equus grevyi JX312720 Equus grevyi 90 JX312720.1 Equus grevyi 77 JX312718.1 Equus zebra JX566996 Equus zebra MZNP 99 JX566998 Equus zebra MZNP 97 JX312717.1 Equus zebra 52 JX566999 Equus zebra BNP 27 Zebra JX566997 Equus zebra MZNP JX567000 Equus zebra BNP JX567001 Equus zebra BNP JX312719 Equus zebra hartmannae HM118851 Equus hemionus 97 JX312728 Equus hemionus kulan AP012271 Equus asinus somalicus NC001788 Equus asinus 85 99 X97337 Equus asinus JN398455 Equus caballus 77 JN398440 Equus caballus JN398405 Equus caballus 97 JN398399 Equus caballus 65 98Antidorcas marsupialis NC001640 Equus caballus 90 JN398385 Equus caballus V00654 Bostaurus 0.02 Supplementary Figure 1q.

  18. EF368025.1 Macropus robustus Y10524 Macropus robustus NC_001794.1Macropus robustus 80 93 Struthio camelus 99 115-3 Tragelaphus strepsiceros 78 106-2 Antidorcas marsupialis (*) EF368024.1 Macropus antilopinus AY099271.1 Macropus fuliginosus 98 JN003400.1 Macropus fuliginosus EF368023.1 Macropus giganteus 83 U87137.1 Macropus giganteus 93 AY099267.1 Macropus giganteus 95 105-2 Struthio camelus U87136.1 Macropus rufus 97 115-1-2 Tragelaphus strepsiceros 99 AY099270.1 Macropus rufus 37Tragelaphus strepsiceros 64 67 Tragelaphus strepsiceros EF368029.1 Macropus agilis EF368030.1 Macropus parma AY237229.1 Macropus parryi 55 AY099281.1 Macropus eugenii 93 AY237226.1 Macropus eugenii 90 EF368028.1 Macropus eugenii 83 AY099280.1 Macropus eugenii EF368026.1 Macropus rufogriseusrufogriseus 53 EF368027.1 Macropus rufogriseusbanksianus 93 AY237227.1 Macropus rufogriseusrufogriseus 63 AY237228.1 Macropus rufogriseusbanksianus AY099272.1 Macropus irma HQ379928.1 Ornithorhynchus anatinus 0.02 Supplementary Figure 1r.

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