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50 bp upstream of JGI/Manatee/Rast genes

50 bp upstream of JGI/Manatee/Rast genes. Finding Sequence Pattern. http://rsat.ccb.sickkids.ca /. JGI . Manatee. Rast. T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTGTATACTG GGAGGTG 0 0 01000 => score= 1 T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTGTATACTG GGAGGTG

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50 bp upstream of JGI/Manatee/Rast genes

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  1. 50 bp upstream of JGI/Manatee/Rast genes

  2. Finding Sequence Pattern • http://rsat.ccb.sickkids.ca/

  3. JGI Manatee Rast

  4. T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTGTATACTG GGAGGTG 0 0 01000 => score= 1 • T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTGTATACTG GGAGGTG 0 0 00100 => score= 1 • T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTGTATACTG GGAGGTG 01 0 1001 => score= 3 • T T TGCGACGGACTGGATAGTGATTTGTAGGAGCGGCTCCTCTG T A T A C T G GG AG G T G 0 0 0 0 011 => score= 2

  5. Minimum score= 6 • JGI 25 bp upstream: 270 • Manatee 25 bp upstream: 284 • Rast 25 bp upstream: 238 • Mean distance from the gene • JGI : 7.1 • Manatee:7.44 • Rast:7.34

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