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Applied Bioinformatics

Applied Bioinformatics

Applied Bioinformatics. Week 6. Topics. Multiple Sequence Alignment Profiles. Why we do multiple alignments?. Multiple nucleotide or amino sequence alignment techniques are usually performed to fit one of the following scopes :

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604 views • 51 slides
Sequence Alignments

Sequence Alignments

Introduction to Bioinformatics. Sequence Alignments. Sequence Alignments. Cornerstone of bioinformatics What is a sequence? Nucleotide sequence Amino acid sequence Pairwise and multiple sequence alignments We will focus on pairwise alignments What alignments can help

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819 views • 43 slides
Multiple s equence alignment and their reliability

Multiple s equence alignment and their reliability

Multiple s equence alignment and their reliability. The Bioinformatics Unit G.S. Wise Faculty of Life Science Tel Aviv University, Israel January 2013 By Haim Ashkenazy http://guidance.tau.ac.il/workshop_2013/. What are alignments good for?. To compare sequences Find homology

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521 views • 43 slides
Summary

Summary

Summary. AFLP, RAPDs, RFLPs, microsatellites Repeatability Test for power (PID and test progeny) Have we sampled enough? Rarefaction curves, resampling, need to be ob flat portion of curve. Microsatellites or SSRs. AGTTTCATGCGTAGGT CG CG CG CG CG AAAATTTTAGGTAAATTT

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612 views • 36 slides
Molecular Forensics

Molecular Forensics

Molecular Forensics. Adapting a Case for Two Different Course Levels. Molecular Forensics. Case Summary. This case is based on a true story HIV+ dentist in Florida was accused of infecting several patients HIV sequences were obtained for the dentist and the patients

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244 views • 15 slides
The Web as a Parallel Corpus

The Web as a Parallel Corpus

The Web as a Parallel Corpus. Parallel corpora are useful Training data for statistical MT Lexical correspondences for cross-lingual IR Early work: Hansards Canadian parliamentary proceedings French/English only Still most resources are in formal newspaper style only.

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285 views • 12 slides
Abstract

Abstract

Core Set of Aligned Template Sequences. Remove poor quality data from sequences. Align sequences with NAST and find near-neighbors. Categorize sequences using multiple taxonomies. Align. Classify. Trim. Distance. Export. Download. retained. trimmed. trimmed. Candidate Sequence.

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161 views • 1 slides

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