'Backward algorithm' presentation slideshows

Hidden Markov Models Part 2: Algorithms

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Hidden Markov Models

Hidden Markov Models. BMI/CS 776 www.biostat.wisc.edu/~craven/776.html Mark Craven craven@biostat.wisc.edu March 2002. Announcements. talks this week Quantitative Genetics in the age of Genomics Bruce Walsh, Univ. of Arizona 4pm 3/11, 184 Russell Labs

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Statistical NLP Spring 2010

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Hidden Markov Models Outline

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Hidden Markov Model Lecture #6

Hidden Markov Model Lecture #6. Background Readings : Chapters 3.1, 3.2 in the text book, Biological Sequence Analysis , Durbin et al., 2001. Use of Markov Chains in Genome search: Modeling CpG Islands.

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Genotype Imputation

Genotype Imputation. Dan Evans devans@psg.ucsf.edu California Pacific Medical Center Research Institute. Outline. Overview Elements of a Hidden Markov Model (HMM) Methods used by MACH Method comparison with IMPUTEv2 Implementation with MACH Implementation with IMPUTEv2

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Hidden Markov Models Outline

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Hidden Markov Models

Hidden Markov Models. Yves Moreau Katholieke Universiteit Leuven. Regular expressions. Alignment Regular expression Problem: regular expression does not distinguish Exceptional TGCTAGG Consensus ACACATC. ACA---ATG TCAACTATC ACAC--AGC AGA---ATC ACCG--ATC.

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Hidden Markov Models

Hidden Markov Models. Lecture 5, Tuesday April 15, 2003. Review of Last Lecture. Lecture 2, Thursday April 3, 2003. Time Warping. Definition: ?(u), ?(u) are connected by an approximate continuous time warping (u 0 , v 0 ), if:

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Hidden Markov Models

Hidden Markov Models. Yves Moreau Katholieke Universiteit Leuven. Regular expressions. Alignment Regular expression Problem: regular expression does not distinguish Exceptional TGCTAGG Consensus ACACATC. ACA---ATG TCAACTATC ACAC--AGC AGA---ATC ACCG--ATC.

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Hidden Markov Models

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Hidden Markov Models

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A Linked-HMM for Robust Voicing and Speech Detection

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Hidden Markov Models

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Hidden Markov Models For Genetic Linkage Analysis Lecture #4

Hidden Markov Models For Genetic Linkage Analysis Lecture #4. Prepared by Dan Geiger. S 1. S 2. S 3. S i-1. S i. S i+1. R 1. R 2. R 3. R i-1. R i. R i+1. X 1. X 1. X2. X2. X3. X3. Xi-1. Xi-1. Xi. Xi. Xi+1. Xi+1. Hidden Markov Models in General.

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Hidden Markov Models

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Hidden Markov Models

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Three classic HMM problems

Three classic HMM problems. Decoding : given a model and an output sequence, what is the most likely state sequence through the model that generated the output? A solution to this problem gives us a way to match up an observed sequence and the states in the model.

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Beam Sampling for the Infinite Hidden Markov Model

Beam Sampling for the Infinite Hidden Markov Model. by. Jurgen Van Gael, Yunus Saatic, Yee Whye Teh and Zoubin Ghahramani. ( ICML 2008 ). Presented by Lihan He ECE, Duke University Nov 14, 2008. Outline. Introduction Infinite HMM Beam sampler Experimental results Conclusion. 2/14.

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CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (II)

CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (II). The model likelihood: Forward algorithm, backward algorithm Posterior decoding. 0.70. 0.65. A: .170 C: .368 G: .274 T: .188. A: .372 C: .198 G: .112 T: .338. 0.35. 0.30. +. ?.

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