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Scalable Algorithms for Analysis of Genomic Diversity Data

Scalable Algorithms for Analysis of Genomic Diversity Data

Scalable Algorithms for Analysis of Genomic Diversity Data. Bogdan Pa?aniuc. Department of Computer Science & Engineering University of Connecticut. Single Nucleotide Polymorphisms. Main form of variation between individual genomes: single nucleotide polymorphisms (SNPs)

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678 views • 50 slides
ISBRA 2007 Tutorial A: Scalable Algorithms for Genotype and Haplotype Analysis

ISBRA 2007 Tutorial A: Scalable Algorithms for Genotype and Haplotype Analysis

ISBRA 2007 Tutorial A: Scalable Algorithms for Genotype and Haplotype Analysis. Ion Mandoiu (University of Connecticut) Alexander Zelikovsky (Georgia State University). Outline. Background on genetic variation Genotype phasing Error detection Disease association search

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453 views • 45 slides
Algorithms for SNP Data Collection and Analysis

Algorithms for SNP Data Collection and Analysis

Algorithms for SNP Data Collection and Analysis. Ion Mandoiu Computer Science & Engineering Department University of Connecticut http://www.engr.uconn.edu/~ion/. Outline. Biological background Algorithms for DNA tag set design Entropy-based SNP genotype phasing Conclusions.

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422 views • 40 slides
Hidden Markov Models of Haplotype Diversity and Applications in Genetic Epidemiology

Hidden Markov Models of Haplotype Diversity and Applications in Genetic Epidemiology

Hidden Markov Models of Haplotype Diversity and Applications in Genetic Epidemiology. Ion Mandoiu University of Connecticut. Outline. HMM model of haplotype diversity Applications Phasing Error detection Imputation Genotype calling from low-coverage sequencing data Conclusions.

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358 views • 35 slides

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