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BLAST and Multiple Sequence Alignment

BLAST and Multiple Sequence Alignment. Learning objectives-Learn the basics of BLAST, Psi-BLAST, and multiple sequence alignment . Which program should one use?. Most researchers use methods for determining local similarities: Smith-Waterman (gold standard) FASTA BLAST. }.

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797 views • 33 slides

Local alignment, BLAST and Psi-BLAST

Local alignment, BLAST and Psi-BLAST. October 25, 2012 Local alignment Quiz 2 Learning objectives-Learn the basics of BLAST and Psi-BLAST Workshop-Use BLAST2 to determine local sequence similarities. Homework #6 due Nov 1 Chapter 5, Problem 8 Chapter 6, Problems 1 and 4. Local Alignment.

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685 views • 22 slides

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Low e value threshold - PowerPoint PPT Presentation

BLAST and Multiple Sequence Alignment

Local alignment, BLAST and Psi-BLAST