'Mage ml' presentation slideshows

DESPRAD subproject

707 views • 60 slides

caarray.nci.nih/

caArray: Cancer Array Informatics Open Source Tools for Microarray Data Management, Analysis and Annotation. caArray overview & demo Mervi Heiskanen (15 min) caArray architecture Scott Gustafson (15 min) webCGH overview & demo David Hall (15 min). http://caarray.nci.nih.gov/.

654 views • 48 slides

MAGE-OM and ArrayExpress database model

MAGE-OM and ArrayExpress database model. Ugis Sarkans, EBI. Outline. what is MAGE-OM what is ArrayExpress what language is used for modeling MAGE-OM structure ArrayExpress status and future MAGE future developments. MAGE-OM. MicroArray Gene Expression Object Model

650 views • 44 slides

MIAMExpress and the development of annotation ontologies for gene expression experiments

MIAMExpress and the development of annotation ontologies for gene expression experiments Ele Holloway Microarray Informatics European Bioinformatics Institute. Microarrays and Data Mining 10 th -11 th December 2002. Outline. Capturing information Ontologies MIAMExpress.

471 views • 37 slides

600 views • 35 slides

April 2004

Microarray Data Management. Jianwei (Jerry) Li. April 2004. Scanner. Image Analysis. .tiff Image File. Raw Gene Expression Data. Gene Annotation. Normalization / Filtering. Normalized Data with Gene Annotation. Expression Analysis. Data Entry / Management.

358 views • 35 slides

European Bioinformatics Institute EMBL-EBI

ArrayExpress A public database for microarray based gene expression data http://www.ebi.ac.uk/microarray/. European Bioinformatics Institute EMBL-EBI Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo + team. MGED IV, Boston, February 2002. ArrayExpress.

461 views • 28 slides

HL7 Clinical-Genomics SIG: Tissue-Typing Models and a Reusable Genotype Module

HL7 Clinical-Genomics SIG: Tissue-Typing Models and a Reusable Genotype Module. HL7 V3 Compliant. Amnon Shabo (Shvo) IBM Research Lab in Haifa. HL7 Clinical-Genomics SIG Facilitator. May 2004. The Genotype CMET. Represents genomic data in HL7 RIM Classes Not meant to be a biological model

368 views • 22 slides

Outline

Outline. Standardization - necessary components what information should be exchanged how the information should be exchanged common terms (ontologies) common ways of describing data processing how to query information ArrayExpress public repository for microarray data

325 views • 19 slides

What is Submission Tracking ?

Presentation on SubmissionTrackingTool: by Anjan Sharma. What is Submission Tracking ?. Curation Process ?. ValidationLog. Otherlog. Curation Database. Submission. MAGE-ML. Ftp Repository. MAGE-ML Repository.

315 views • 16 slides

What is Submission Tracking ?

Presentation on SubmissionTrackingTool: by Anjan Sharma. What is Submission Tracking ?. Curation Process ?. ValidationLog. Otherlog. Curation Database. Submission. MAGE-ML. Ftp Repository. MAGE-ML Repository.

225 views • 16 slides

The Penn Experience with MAGE-TAB

307 views • 14 slides

The Penn Experience with MAGE-TAB

159 views • 14 slides

Integration of J-Express with ArrayExpress

Partner 20 University of Bergen Inge Jonassen - inge@ii.uib.no Kjell Petersen - kjellp@ii.uib.no. Integration of J-Express with ArrayExpress. Introduction. Role in DESPRAD/TEMBLOR project Integration of analysis tool J-Express with ArrayExpress

260 views • 13 slides

GenePattern

GenePattern. Overview for MAGE-TAB Workshop Ted Liefeld January 24, 2007. a platform for integrative genomics. Module Repository. Pipeline Environment. Client User Interfaces. all_aml_train. all_aml_test. KNN. GSEA. Preprocess. Preprocess. NMF. SVM. SOM Clustering. Class

112 views • 10 slides

DESPRAD meeting report

DESPRAD meeting report. Patrick Kemmeren Genomics Lab, UMC Utrecht. Overview. Data deposited in ArrayExpress Current analysis pipeline Future developments. Data in ArrayExpress. Submitted through MAGE-ML documents Fully MIAME compliant Data submitted so far:

181 views • 9 slides

Visualisation module

Internet. New. New. New. New. MIAMExpress New Components : Web Service, ADF-MAGEML Converter,Visualization tool, Batch Upload.

119 views • 1 slides