'Pairwise sequence alignment' presentation slideshows

Multiple Sequence Alignment

Multiple Sequence Alignment. Terminology. Motif: the biological object one attempts to model - a functional or structural domain, active site, phosphorylation site etc. Pattern: a qualitative motif description based on a regular expression-like syntax

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An overview of Bioinformatics

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BNFO 602 Lecture 2

BNFO 602 Lecture 2. Usman Roshan. -3 mil yrs. AAGACTT. AAGACTT. AAGACTT. AAGACTT. AAGACTT. -2 mil yrs. AAGGCTT. AAG G CTT. AAGGCTT. AAGGCTT. T_GACTT. T_GACTT. T _ GACTT. T_GACTT. -1 mil yrs. _GGGCTT. _ G GGCTT. _GGGCTT. TAGACCTT. T AG A C CTT. TAGACCTT. A _ C ACTT. A_CACTT.

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Pairwise sequence alignments

Pairwise sequence alignments. Etienne de Villiers Adapted with permission of Swiss EMBnet node and SIB. Outline. Introduction Definitions Biological context of pairwise alignments Computing of pairwise alignments Some programs. Importance of pairwise alignments.

751 views • 36 slides

CS 177 Sequence Alignment

CS 177 Sequence Alignment. Classification of sequence alignments The need for sequence alignment The alignment problem Alignment methods Editing and formatting alignments. Classification of sequence alignments The need for sequence alignment The alignment problem

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Part II : Sequence Comparison Multiple Sequence Alignment

Part II : Sequence Comparison Multiple Sequence Alignment. By Zhiwei Cao Dept. of Biological Science National university of Singapore Email: dbsczw@nus.edu.sg. Pair-Wise Alignment : Two Sequences. Multiple sequence alignment -- MSA.

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Sequence Alignments Some key terms and concepts : Indel (insertion and deletion)

Sequence Alignments Some key terms and concepts : Indel (insertion and deletion) Pairwise sequence alignment ( eg . Blast) versus multiple sequence alignment ( eg . Clustal ) Scoring models and matrices (applies to both amino-acid and nucleotide sequences)

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Sequence Alignment and Phylogenetic Prediction using Map Reduce Programming Model in Hadoop DFS

Sequence Alignment and Phylogenetic Prediction using Map Reduce Programming Model in Hadoop DFS. Presented by C. Geetha Jini (07MW03) D. Komagal Meenakshi (07MW05). Guided by Dr. G. Sudha Sadasivam Asst. Professor Dept. of CSE. What is Sequence Alignment?.

388 views • 26 slides

Algorithms for Pairwise Sequence Alignment

Algorithms for Pairwise Sequence Alignment. Craig A. Struble, Ph.D. Marquette University. Overview. Pairwise Sequence Alignment Dynamic Programming Solution Global Alignment Local Alignment BLAST and FASTA. Pairwise Sequence Alignment.

628 views • 26 slides

Sequence Alignment and Phylogenetic Prediction using Map Reduce Programming Model in Hadoop DFS

Sequence Alignment and Phylogenetic Prediction using Map Reduce Programming Model in Hadoop DFS. Presented by C. Geetha Jini (07MW03) D. Komagal Meenakshi (07MW05). Guided by Dr. G. Sudha Sadasivam Asst. Professor Dept. of CSE. What is Sequence Alignment?.

264 views • 26 slides

A Brief Introduction to Biological Sequence Alignment

A Brief Introduction to Biological Sequence Alignment. Sun Kim CSE SNU For Bio Data Mining 4541.776.002 Sep 2011. Aligning a pair of sequences. Problem: given a pair of sequences, find the best alignment among all possible alignments. Goal: to compute the best alignment needs

423 views • 22 slides

Matlab Bioinformatics Toolkit Evaluation

Matlab Bioinformatics Toolkit Evaluation . Kanishka Bhutani. What I expected ??. Local/Global sequence alignments. Multiple sequence alignments. Choice of different scoring matrices (BLOSUM, PAM) for evaluation. Build Hidden Markov Models.

337 views • 19 slides

Matlab Bioinformatics Toolkit Evaluation

Matlab Bioinformatics Toolkit Evaluation . Kanishka Bhutani. What I expected ??. Local/Global sequence alignments. Multiple sequence alignments. Choice of different scoring matrices (BLOSUM, PAM) for evaluation. Build Hidden Markov Models.

200 views • 19 slides

278 views • 16 slides

Algorithms for Biological Sequence Analysis

Algorithms for Biological Sequence Analysis. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan E-mail: kmchao@csie.ntu.edu.tw WWW: http://www.csie.ntu.edu.tw/~kmchao. About this course.

121 views • 12 slides