'Regulated genes' presentation slideshows

Evolution of bacterial regulatory systems

527 views • 42 slides

Update on StemBase, the database of the Stem Cell Genomics Project

Update on StemBase, the database of the Stem Cell Genomics Project. Miguel Andrade, OHRI, Ottawa. Stem Cell Genomics Project. StemBase. DVD release Oct 2005. Stem Cell Genomics Project. StemBase. DVD release Oct 2005. The Stem Cell Genomics Project.

477 views • 37 slides

Intro & materials

lab 2. Intro & materials. Monday MA experimental basic MA data analysis Introduction to lab 1 lab 1. Tuesday Introduction to lab 2 lab 2. Overview. Bio-Informatic motivation. Intro lab 2. Biological question Differentially expressed genes Classification etc.

408 views • 29 slides

Microarray experiments. Database and Analysis Tools.

Microarray experiments. Database and Analysis Tools. Kate Milova cDNA Microarray Facility March 24, 2005. Outline. Microarray platforms and services at AECOM: cDNA Long Oligo Affymetrix Database (cDNA & Long Oligo) structure and content: Printing information Chip layout

376 views • 26 slides

Gene Ontology Project geneontology/

Gene Ontology Project http://www.geneontology.org/. Who is citing GO?. 450. 1063 publications over 284 Journals. http://www.geneontology.org/cgi-bin/biblio.cgi. Week ending 25th September 2006. National Institute on Alcohol Abuse and Alcoholism (NIAAA)

359 views • 24 slides

Difference in Gene Regulation by Smad and CLIC proteins in Drosophila

Michael Vuong. Difference in Gene Regulation by Smad and CLIC proteins in Drosophila. Alcohol Study. National Institute on Alcohol Abuse and Alcoholism About 1 in 4 people who drink heavily may have alcohol dependence or abuse problems

348 views • 23 slides

Analysis of data from Real time experiments

Analysis of data from Real time experiments. J.M.K. Mulema Department of Molecular and Cell Biology University of Cape Town. Introduction. Quantifying RNA ; Northern blotting, In situ hybridization, RNAse protection assays, Microarray, RT-PCR . Real time PCR

419 views • 23 slides

Data mining with the Gene Ontology

342 views • 21 slides

Around the triangle

Around the triangle. arrays. Chris Evelo BiGCaT Bioinformatics Maastricht May 19 2004. paths. QTLs. Involve information about chromosome locations of traits in expression analyses. Around the triangle. How to combine expression data with known pathways and

247 views • 17 slides

Genes Involved in Plant Stress Response and Evolution of their Responsiveness

Genes Involved in Plant Stress Response and Evolution of their Responsiveness. Cheng Zou 11/09/2007. The Stress Response is Unique and Vital to Plants. Soybean aphid, Aphis glycines (Photo Claudio Gratton).

253 views • 10 slides

C5 : Software for Microarray Analysis ??? ? ??? ????? ??? ( November/2005 )

C5 : Software for Microarray Analysis ??? ? ??? ????? ??? ( November/2005 ). MA-Plot and Other Program Listing. compustt spot features maplot matlab MA plot linearfit normalization geneUD up/down genes cluster K-means Algo. bestBC feature selection

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Distribution of DBDs in the TF Regulatory Network

+. _. +. +. _. _. _. metR. iclR. dnaA. _. rhaS. marA. marR. _. uidR. _. metJ. fadR. +. iciA. rhaR. _. _. uxuR. soxS. rob. +. _. exuR. _. lrp. soxR. mlc. +. fecI. +. _. +. +. +. +. +. +. malT. malI. melR. yiaJ. araC. glpR. glnG. gutM. fucR. fur.

117 views • 3 slides

Outcome: lists of regulated genes and exons between different experimental conditions.

Overview of splicing array analysis. Outcome: lists of regulated genes and exons between different experimental conditions.

89 views • 2 slides

INTRODUCTION

193962_at. Target. 150. 188023_at. 6. 100. Time. 5. 50. Residual. 4. Height. 3. 0. 40. 30. 20. 10. 0. 2. Expression. 1. 4. SIMULATIONS A simulation model [5] was first used to generate time series expression profiles.

81 views • 1 slides

ARVO Poster 3093/B6-46

rd1 mice at PN15 +/- Neuroprotective Treatment (48h). GDNF. CNTF. PN15. PBS. Isolation of RNA form retina Preparation of Biological Duplicate Samples, QC. Affymetrix Transcription Profiling MG U74-2 arrays (36k transcripts). Quality Index Assessment of transcription profiling data.

504 views • 1 slides

Apostolos Zaravinos and Constantinos C. Deltas

DIFFERENTIALLY EXPRESSED GENES AND THEIR ASSOCIATED NETWORKS IN CLEAR-CELL RENAL CELL CARCINOMA (RCC). Apostolos Zaravinos and Constantinos C. Deltas.

148 views • 1 slides

Apostolos Zaravinos , Myrtani Pieri, Nikos Mourmouras, Natassa Anastasiadou,

Altered metabolic pathways in clear cell renal cell carcinoma: A meta-analysis and validation study focused on the deregulated genes and their associated networks. Apostolos Zaravinos , Myrtani Pieri, Nikos Mourmouras, Natassa Anastasiadou, Ioanna Zouvani, Dimitris Delakas , Constantinos Deltas.

166 views • 1 slides

Up regulated genes PLW vs PLC

Up-regulated genes in PLAvsPLC. Up regulated genes PLW vs PLC. supplementary Fig 1,.

113 views • 1 slides

T3 (1 gene)

v-ErbA. Differentiation. v-ErbA. (66 repressed genes). (54 up-regulated genes ). (44 up-regulated genes). (69 repressed genes ). 3. 64. 2. 52. 41. 66. A. Differentiation. B. v-ErbA (15 genes). RA (3 genes). 4. 3. Differentiation (11 genes). T3 (1 gene). 1. 7.

100 views • 1 slides

Ccl2, Ccl7, Pai2, Il1Rl1 Dusp6, Eps8, Ngef, Itga6, Cd44, F3, Mmp3, Hmga1

Delayed genes. Down-regulated genes. 2. 1. 82 genes. 2. -1. 4-24. 1. -2. -1. 4. -2. 4-6. 31 genes. 2. 69 genes. 4-6. -2. -4. 2. 2. 2. 87 genes. 1. 1. 1. 58 genes. -1. 2-6. -1. -1. -2. -2. -2. 4-24. 2-6. 82 genes. 0.5 1 2 4 6 24 hrs.

349 views • 1 slides