'Tata box' presentation slideshows

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Genome Organization & Protein Synthesis and Processing in Plants

Genome Organization & Protein Synthesis and Processing in Plants. Viral genomes. Viral genomes: ssRNA, dsRNA, ssDNA, dsDNA, linear or ciruclar Viruses with RNA genomes: Almost all plant viruses and some bacterial and animal viruses Genomes are rather small (a few thousand nucleotides)

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Section M Transcription in Eukaryotes

M1 The three RNA polmerases: Characterization and function M2 RNA pol. I genes: The ribosomal repeat M3 RNA pol. III genes: tRNA and 5S ribosomal repeat M4 RNA pol. II genes: Promoters and enhancers M5 General transcri. factors and pol. II initiation.

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An HV-SVM Classifier to Infer TF-TF Interactions Using Protein Domains and GO Annotations

An HV-SVM Classifier to Infer TF-TF Interactions Using Protein Domains and GO Annotations. Xiao-Li Li Institute for Infocomm Research, Singapore Nanyang Technological University, Singapore Joint work with Junxiang Lee (National University of Singapore)

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Cloning Promoters

Cloning Promoters. Kelli Henry April 27, 2009. Preglobular. Globular. Zygote. Transition. Heart. Torpedo. Linear Cotyledon. Linear Cotyledon. Bending Cotyledon. Mature Green. Where in the Seed Is Your Gene of Interest Transcribed? At What Stage of Development?. Seed Coat. Endosperm.

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A comparison of the structures of procaryotic and eucaryotic mRNA molecules.

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Chapter 12 DNA & RNA

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Regulation of Chloroplast Gene Expression

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Perl Programming for Biology

Perl Programming for Biology. G.S. Wise Faculty of Life Science Tel Aviv University, Israel October 2011 David (Dudu) Burstein and Ofir Cohen http://ibis.tau.ac.il/perluser/2012/. About Perl.

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Promoters

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The Synthesis and Processing of RNA

The Synthesis and Processing of RNA. RNA. Single stranded Nitrogenous bases -A:U C:G -Unlike DNA, RNA has uracil instead of thymine. Synthesis . RNA synthesis is directed by a DNA template which is described through three phases : intiation , elongation, and termination. . Three phases.

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GENE REGULATION

GENE REGULATION. Definition. The mechanisms that determine the types of cells in which a gene will be transcribed. When the mRNA will be exported to the cytoplasm. When and how often the mRNA will be translated, and the duration of time before the mRNA is degraded. Regulation categories.

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Genome Organization and Evolution

Genome Organization and Evolution. For 2/24/04 Read: Lesk, Chapter 2 Exercises 2.1, 2.5, 2.7, p 110 Problem 2.2, p 112 Weblems 2.4, 2.7, pp 112-113. Assignment. For 3/02/04

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AtMYB80 (0.0321)

AtMYB102 (0.1546). AtMYB74 (0.1371). AtMYB41 (0.2087). AtMYB32 (0.1934). AtMYB4 (0.1944). Os12g07640 (0.2380). AtMYB80 (0.0321). BnMYB80 (0.0308). GhMYB80 (0.1860). OsMYB80 (0.0838). TaMYB80 (0.0791). AtMYB35 (0.3191). Os03g18480 (0.3100). Os02g42870 (0.2969).

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Promoters in Eukaryotic DNA

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Transcription

Transcription . Vocabulary of tr anscription: transcription - synthesis of RNA under the direction of DNA messenger RNA (mRNA) - carries genetic message from DNA to the ribosome for the synthesis of protein translation - synthesis of protein under the direction of mRNA

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(A) DP1

(A) DP1. PPAR-?. GATA-1. POU1F1a. Homeobox. (B) DP2. C-Myb. Homeobox. Homeobox. YY1. Homeobox. Supplementary Figure 3. (C) DP3. SF1. CP1. Homeobox. (D) DP4 (microRNA). (E) DP5. E-box. GR. CAT-box. Supplementary Figure 3 (continued). (F) DP6. GR. (G) DP7. E-box. E-box.

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Fig 9

P-Box. ATC-element. TGA-element. Fig S5. TCA-Element. MeJA-re. G-Box. I-Box. Sp1 motif. CAAT-Box. TSS. TATA-Box. Fig 9.

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