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CS5263 Bioinformatics

CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 13: Hidden Markov Models and applications. Project ideas. Implement an HMM Iterative refinement MSA Motif finder Implement an algorithm in a paper Write a survey paper. NAR Web Server Issue.

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696 views • 60 slides
Inverse Alignment

Inverse Alignment

Inverse Alignment. CS 374 Bahman Bahmani Fall 2006. The Papers To Be Presented. Sequence Comparison - Alignment. Alignments can be thought of as two sequences differing due to mutations happened during the evolution. AGGCTATCACCTGACCTCCAGGCCGATGCCC TAGCTATCACGACCGCGGTCGATTTGCCCGAC.

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566 views • 46 slides
Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local & Global Alignment)

Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local & Global Alignment)

Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local & Global Alignment). G P S Raghava. Protein Sequence Alignment and Database Searching. Alignment of Two Sequences (Pair-wise Alignment) The Scoring Schemes or Weight Matrices Techniques of Alignments DOTPLOT

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1.23k views • 43 slides
Basics of Sequence Alignment and Weight Matrices and DOT Plot

Basics of Sequence Alignment and Weight Matrices and DOT Plot

Basics of Sequence Alignment and Weight Matrices and DOT Plot. G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/. Importance of Sequence Comparison. Protein Structure Prediction Similar sequence have similar structure & function Phylogenetic Tree

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1.36k views • 35 slides

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