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Oklahoma Cyberinfrastructure

Oklahoma Cyberinfrastructure Presenter: Henry Neeman Director, OU Supercomputing Center for Education & Research University of Oklahoma EPSCoR Cyberinfrastructure Meeting Lexington, KY October 15-16 2007 University of Oklahoma Henry Neeman High end computing hneeman@ou.edu

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Oklahoma Cyberinfrastructure

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  1. Oklahoma Cyberinfrastructure Presenter: Henry Neeman Director, OU Supercomputing Center for Education & Research University of Oklahoma EPSCoR Cyberinfrastructure Meeting Lexington, KY October 15-16 2007

  2. University of Oklahoma Henry Neeman High end computing hneeman@ou.edu Oklahoma Participants Here University of Tulsa Rose Gamble Grid computing gamble@utulsa.edu Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  3. E E E E Stakeholders Eye charts follow …. Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  4. Oklahoma State U (15) Biochem & Molecular Bio: Hoyt Biosystems & Agriculture: Storm Botany: Palmer Chemistry: Eastman, Lavine Computer Science: Dai, Li, Sarangan Electrical Engineering: Stine Geology: Atekwana Management Science and Information Systems: Sharda Marketing: Mowen Mathematics: Biinegar Physics: Mintmire Statistics: Monks U Tulsa (9) Biology: Buchheim Electrical Engineering: LoPresti, Manikas Mathematics & Computer Science: Gamble Mechanical Engineering: Mohan, Shirazi Petroleum Engineering: Reynolds, Saricka, Shoham Oklahoma School of Science & Math (1) Computer Science: Zimmer Oklahoma Medical Research Foundation (1) Wren National Severe Storms Lab (1) Wicker Cameron U (3) Mathematics: Argyros, Zhao Physical Science: Nalley East Central U (2) Chemistry: Myers Mathematics: Ferdinand Langston U (2) Mathematics & Physics: Snow Computer Information Sciences: Tiako Oklahoma Baptist U (4) Biology: Jett Chemistry: Jordan Mathematics: Hobbs Physics: Chen Oklahoma City U (2) Computer Science:Kazmierczak, Sells St. Gregory’s U (1) Physical Sciences: Meyer U Central Oklahoma (2) Physics & Engineering: Lemley, Sanchez Rogers State University (1) Mathematics and Sciences: Soe Southeastern Oklahoma State U (1) Computer Science: Morris Southwestern Oklahoma State U (3) Chemistry: Kelly, Linder Computer Science: Moseley E E E E 16 institutions,137 people Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  5. Aerospace & Mechanical Engr (6): Altan, Attar, Lai, Siddique, Striz, Vedula Biochemistry & Molecular Biology (2): Mooers, Zlotnick Botany & Microbiology (3): Conway, Wallace, Zhou Center for Analysis & Prediction of Storms (5): Brewster, Brotzge, Gao, Kong, Weber (+ Carr, Droegemeier, Shapiro, Xue of Meteorology) Chemical, Biological & Materials Engr (7): Bagajewicz, Grady, Nollert, O’Rear Papavassiliou, Schmidtke, Striolo Chemistry & Biochemistry (3): Roe, Soloshonok, Wheeler Civil Engr & Environmental Sci (7): Hatami, Kolar, Mish, Muraleetharan, Nanny, Vieux, Zaman Communication (1): O’Hair Computer Science (11): Antonio, Atiquzzaman, Cheng, Dhall, Dong, Fagg, Gruenwald, Hougen, Lakshmivarahan, McGovern, Thulasiraman Cooperative Institute for Mesoscale Meteorological Studies (3): Kogan, Mansell, Mechem Economics (1): LaMarche Electrical & Computer Engr (6): Cruz, Ibrahim, Sluss, Tull, Yeary, Yu Finance (1): Linn Geography (1): Yuan Geology & Geophysics (1): Keller Industrial Engr (1): Trafalis K20 Center for Educational & Community Renewal (2): Arana, O’Hair Mathematics (2): Gutman, White Meteorology (7): Carr, Droegemeier, Fedorovich, Richman, Shapiro, Straka, Xue Oklahoma Biological Survey (1): Broughton OU Supercomputing Center for Education & Research (1): Neeman Radiological Sciences (1): Wu Petroleum & Geological Engineering (2): Oliver, Zhang Physics & Astronomy (10): Abbott, Baron, Gutierrez, Kao, Milton, Parker, Severini, Skubic, Strauss, Wang Sarkeys Energy Center (1): Chesnokov Surgery (1): Gusev Zoology (2): Ray, Wang OUHSC E E E E 89 Participants @ OU Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  6. Large-scale computational modeling of nanostructured materials [Mintmire] Devising Heterogeneous Sensor Networks in Critical Applications [LoPresti,Gamble] High throughput transport protocols for bulk data grid applications [Sarangan] Seamless mobility management for space Internet [Atiquzzaman] Tornado anticipation through advanced data mining [McGovern, Droegemeier] NEESsim: Scalable computing for extreme loads on structures [Mish, Muraleetharan] Electromagnetic simulation tools for human MRI at very high field strength [Ibrahim] LEAD: Linked environments for atmospheric discovery [Droegemeier, Xue, Weber] CASA: ERC for Collaborative Adaptive Sensing of Atmosphere [Xue, Droegemeier] Geoinformatics and knowledge discovery of geographic dynamics [Yuan] Distributed conceptual design of aerospace vehicles [Striz, Attar, Vedula, Siddique] Evolution of complexity in self-replicating machine code [Ray, Shao] Scalable adaptive computational toolkit for large-scale scientific applications [Li] Numerical simulation of katabatic and anabatic flows [Shapiro, Federovich] Intrinsic compiler support for interval arithmetic with MPI support [Stine] Structure and thermochemistry of transition metal hydroxides [Myers] Methods for Finding Disease Susceptibility Genes by use of the Genetics of Gene Expression [Monks] Neutral theories of biodiversity in fractal landscapes [Palmer] Determining protein structures with > 1000 atoms using direct methods [Mooers] High-resolution simulations of precipitating cloud systems [Kogan, Mechem] Agent-based computational modeling of artificial markets [Linn] Ultrahigh resolution hydrologic/water quality models [Storm] Grid applications in high energy physics [Skubic, Strauss, Gutierrez, Snow et al] Large-scale phylogenetic analysis of mitochondrial and nuclear genes [Broughton] LES and entropic Lattice Boltzmann models for high Reynolds number flows [Soe] Evolutionary computing methods for cooperative and competitive agents [Hougen] Megascale genomic DNA sequencing and mRNA based gene expression data [Roe] Parallel computing in the retrofit of sensor networks in process plants [Bagajewicz] Improving tornado detection with WSR-88D data [Yu] Center for Integrated Bioenergy, Ecogenomics & Global Changes [Zhou, White, Luo] Description of paths and intermediates in virus self-assembly reactions [Zlotnick] Parallel combinatorial and sequence analysis algorithms for bioinformatics [Dai] Seismic retrofitting of levees using geosynthetics [Hatami, Muraleetharan] Grid computing for protein folding and misfolding [Wheeler] Distributed data mining of large data sets and data visualization [Sharda] Parallel Computing for large scale discrete optimization [Thulasiraman] E E E E Examples of Enabled Research Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  7. Supercomputers Intel Xeon cluster: 1024 Pentium4 Xeon EM64T 3.2 GHz CPUs Peak speed 6.5 TFLOPs (trillion calculations per second) 2176 GB RAM 44,000 GB disk Infiniband high performance network Red Hat Linux (Enterprise 4) Grid development Intel Itanium2 cluster: 64 Intel Itanium2 1.0 GHz CPUs Peak speed 256 GFLOPs 128 GB RAM 4200 GB disk Infiniband Red Hat Linux (Enterprise 4) Storage Library Overland Storage NEO8000 LTO-3 tape format (400 GB per tape) Maximum capacity (at LTO-4): 400 TB Initial drives: 2 Initial capacity: 100 TB Already purchased; being deployed fall 2007 Condor pool Desktop PCs in IT labs can be used for number crunching (cost: $0; 600+ so far) Existing Resources: OU Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  8. Supercomputer Intel Xeon cluster: 128 Pentium4 Xeon EM64T 3.2 GHz CPUs Peak speed 819 GFLOPs (billion calculations per second) 256 GB RAM 4,000 GB disk Infiniband high performance network Red Hat Linux (Enterprise 4) Existing Resources: OSU Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  9. Supercomputer Intel Xeon cluster: 24 Pentium4 Xeon EM64T 2.33 GHz CPUs, 4 cores each Peak speed 895 GFLOPs (billion calculations per second) 192 GB RAM 1,000 GB disk Infiniband high performance network Red Hat Linux (Enterprise 4) Existing Resources: TU Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  10. National Lambda Rail/Internet2 10 Gbps network to research universities and national laboratories Existing Resources: OK Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  11. Other Existing Resources Many universities with intersecting computational needs • Research:Large scale computational science & engineering by faculty at OK universities • Education: faculty at OK universities • High End Networking: faculty at OU, OSU, TU • Computational Science & Engineering: faculty at most OK schools • Sensor Networks: Mesonet; CASA; Biosensor projects; faculty at OU, OSU, TU Shared Instruments Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  12. teach students and faculty to use FREE Condor middleware, which steals computing time on idle desktop PCs; teach system administrators to deploy and maintain Condor on PCs; teach bioinformatics students to use BLAST on Condor; provide Condor Cyberinfrastructure to the national community (FREE). Condor pool of 750 desktop PCs (already part of the Open Science Grid); Supercomputing in Plain English workshops via videoconferencing; Cyberinfrastructure rounds (consulting) via videoconferencing; drop-in CDs for installing full-featured Condor on a Windows PC (Cyberinfrastructure for FREE); sysadmin consulting for installing and maintaining Condor on desktop PCs. OU’s team includes: High School, Minority Serving, 2-year, 4-year, masters-granting; 17 of the 26 institutions are in 8 EPSCoR states (AR, DE, KS, ND, NE, NM, OK, WV). OU NSF CI-TEAM Project Cyberinfrastructure Education for Bioinformatics and Beyond Objectives: OU will provide: Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  13. Participants at OU (29 faculty/staff in 16 depts) Information Technology OSCER: Neeman (PI) College of Arts & Sciences Botany & Microbiology: Conway, Wren Chemistry & Biochemistry: Roe (Co-PI), Wheeler Mathematics: White Physics & Astronomy: Kao, Severini (Co-PI), Skubic, Strauss Zoology: Ray College of Earth & Energy Sarkeys Energy Center: Chesnokov College of Engineering Aerospace & Mechanical Engr: Striz Chemical, Biological & Materials Engr: Papavassiliou Civil Engr & Environmental Science: Vieux Computer Science: Dhall, Fagg, Hougen, Lakshmivarahan, McGovern, Radhakrishnan Electrical & Computer Engr: Cruz, Todd, Yeary, Yu Industrial Engr: Trafalis Health Sciences Center Biochemistry & Molecular Biology: Zlotnick Radiological Sciences: Wu (Co-PI) Surgery: Gusev Participants at other institutions (26 institutions in 15 states) California State U Pomona (masters-granting, minority serving): Lee Colorado State University: Kalkhan Contra Costa College (2-year, minority serving): Murphy Delaware State University Earlham College (4-year): Peck East Central U (masters-granting): Ferdinand, Myers Emporia State U (masters-granting): Pheatt, Ballester Kansas State U: Andresen, Monaco Langston U (masters-granting, minority serving): Snow Longwood U (VA) Marshall University (WV) : Richards Navajo Technical College (NM): Ribble Oklahoma Baptist U (4-year): Chen, Jett, Jordan Oklahoma School of Science & Mathematics (high school): Samadzadeh Riverside Community College (CA) St. Cloud State U (MN): Herath St. Gregory’s U (4-year): Meyer Southwestern Oklahoma State U: Linder, Moseley Texas A&M University-Corpus Christi U Arkansas: Apon University of Arkansas Little Rock U Central Oklahoma (masters-granting): Lemley, Wilson U Kansas: Bishop U Nebraska-Lincoln: Swanson University of North Dakota U Northern Iowa (masters-granting): Gray E E E E NSF CI-TEAM Grant Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  14. For More Information Henry Neeman hneeman@ou.edu Rose Gamble gamble@utulsa.edu Oklahoma Cyberinfrastructure EPSCoR CI, Lexington KY, October 15-16 2007

  15. Thanks for your attention! Questions?

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