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FlyBase 2018: New look, new features Steven Marygold London Fly Meeting, April 2018

FlyBase 2018: New look, new features Steven Marygold London Fly Meeting, April 2018. Typical use case:. SEARCH. FILTER/REFINE. DOWNLOAD/EXPORT. BROWSE REPORT (S). ANALYSE. Outline. Basic Searches Jump to Gene, QuickSearch HitLists Filters, List/Table view, Export/Download Reports

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FlyBase 2018: New look, new features Steven Marygold London Fly Meeting, April 2018

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  1. FlyBase 2018: New look, new featuresSteven MarygoldLondon Fly Meeting, April 2018

  2. Typical use case: SEARCH FILTER/REFINE DOWNLOAD/EXPORT BROWSE REPORT(S) ANALYSE

  3. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  4. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  5. Jump to Gene/Search

  6. QuickSearch

  7. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  8. HitLists – List view

  9. HitLists – Table view

  10. HitLists – Convert/Export/Analyze

  11. HitLists – Analyze

  12. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  13. Gene Report

  14. General Information

  15. Genomic data

  16. GO Summary Ribbons

  17. Gene Groups

  18. Protein domain graphics

  19. JBrowse - Protein domains

  20. Human Disease Model data

  21. Functional Complementation Data

  22. Datasets

  23. Reference filtering

  24. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  25. QuickSearch

  26. ‘GAL4 etc.’ search

  27. Frequently Used GAL4 Drivers

  28. Orthology search

  29. Orthology search

  30. Orthology search results

  31. Human Disease search

  32. Human Disease search

  33. Sequence Downloader

  34. Sequence Downloader

  35. Sequence Downloader

  36. Sequence Downloader

  37. Outline • Basic Searches • Jump to Gene, QuickSearch • HitLists • Filters, List/Table view, Export/Download • Reports • Navigation, summaries, GO ribbons, protein domains... • New tools • GAL4, Orthologs, Human Disease, Sequence Downloader • Feedback/Help

  38. Keeping in touch

  39. Further information

  40. Acknowledgements & funding FB-Harvard (USA): Norbert Perrimon (PI) Julie Agapite Kris Broll Lynn Crosby Gil dos Santos David Emmert Sian Gramates Kathleen Falls Beverley Matthews Susan Russo Gelbart Christopher Tabone Pinglei Zhou Mark Zytkovicz FB-Indiana (USA): Thomas Kaufman (PI) Brian Calvi (PI) Bryon Czoch Josh Goodman Victor Strelets Jim Thurmond FB-Cambridge (UK): Nick Brown (PI) Giulia Antonazzo Helen Attrill Silvie Fexova Phani Garapati Alex Holmes Aoife Larkin Steven Marygold Gillian Millburn Clare Pilgrim Vitor Trovisco Pepe Urbano FB-New Mexico (USA): Richard Cripps (PI) Maggie Werner-Washburne (PI) Phillip Baker Funding: NHGRI at the U.S. National Institutes of Health (U41HG000739) UK Medical Research Council (G1000968)

  41. Website Access Fee

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