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Chapter 17. From Gene to Protein. DNA structure = double helix DNA sugar = deoxyribose DNA bases = A, T, C, & G A T C T C G A G T C G A T T A G A G C T C A G C T A. DNA. RNA structure = usually single stranded RNA sugar = ribose
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Chapter 17 From Gene to Protein
DNA structure = double helix DNA sugar = deoxyribose DNA bases = A, T, C, & G A T C T C G A G T C G A T T A G A G C T C A G C T A DNA
RNA structure = usually single stranded RNA sugar = ribose RNA bases = A, U (uracil), C, & G (no thymine) DNA sequence: A T C T C G A G T C G A T RNA sequence: U A G A G C U C A GC U A RNA
gene – a short sequence of DNA that codes for a specific piece of information The Connection Between Genes & Proteins
Beadle and Tatum proposed the one gene – one enzyme hypothesis one gene – one enzyme hypothesis – states that the function of a gene is to produce a specific enzyme The Connection Between Genes & Proteins
As researchers have learned more about enzymes and proteins their hypothesis is better stated as the one gene –one polypeptide hypothesis We now know that genes provide the instructions for making proteins each gene is usually hundreds or thousands of nucleotides long The Connection Between Genes & Proteins
Transcription – the process by which genetic information is copied from DNA to RNA results in a single stranded RNA molecule that is carried from the nucleus to the cytoplasm Making Proteins From DNA
Promoter Transcription unit 5 3 3 5 Start point RNA polymerase The Stages of Transcription DNA
Steps of Transcription RNA polymerase binds to a specific region on the DNA called a promoter Making Proteins From DNA
1 Promoter Transcription unit 5 3 3 5 Start point RNA polymerase Initiation. After RNA polymerase binds to the promoter, the DNA strands unwind, and the polymerase initiates RNA synthesis at the start point on the template strand. 5 3 3 5 Template strand of DNA Unwound DNA RNA transcript The Stages of Transcription DNA
Making Proteins From DNA Steps of Transcription • RNA polymerase binds to a specific region on the DNA called a promoter • This causes the DNA to separate
2 1 Promoter Transcription unit 5 3 3 5 Start point RNA polymerase Initiation. After RNA polymerase binds to the promoter, the DNA strands unwind, and the polymerase initiates RNA synthesis at the start point on the template strand. 5 3 3 5 Template strand of DNA Unwound DNA RNA transcript Elongation. The polymerase moves downstream, unwinding the DNA and elongating the RNA transcript 5 3 . In the wake of transcription, the DNA strands re-form a double helix. Rewound RNA 5 3 3 5 3 5 RNA transcript The Stages of Transcription DNA
Making Proteins From DNA Steps of Transcription • RNA polymerase binds to a specific region on the DNA called a promoter • This causes the DNA to separate • RNA polymerase adds nucleotides one by one forming a new RNA molecule until it reaches a termination (or “stop”) signal • The newly formed strand is called mRNA • mRNA – a single uncoiled chain of RNA nucleotides that carries genetic information to the ribosome for protein production • mRNA travels from the nucleus to the ribosome for protein synthesis
Transcription Video Real Time Transcription Video Making Proteins From DNA
Translation – the process of making polypeptides (proteins) using mRNA as a template the mRNA is converted into a sequence of amino acids, which makeup proteins Making Proteins From DNA
Translation – the process of making polypeptides (proteins) using mRNA as a template the mRNA is converted into a sequence of amino acids, which makeup proteins the mRNA is broken up into segments of 3’s called codons codon – a sequence of 3 nitrogen bases in mRNA that code for an amino acid Making Proteins From DNA
codon – a sequence of 3 nitrogen bases in mRNA that code for an amino acid the sequence of codons along the mRNA is decoded into a sequence of amino acids which make up the polypeptide chain Making Proteins From DNA
DNA molecule Gene 2 Gene 1 Gene 3 DNA strand (template) 5 3 A C C A A A C C G A G T TRANSCRIPTION G U G G U G C A U U U C 5 3 mRNA Codon TRANSLATION Gly Phe Protein Ser Trp Amino acid Figure 17.4 The triplet code
Example: mRNA = CUGCUAGCUAGCUUCGAUCGAUGA a.a. = Leu- Leu- Ala- Ser- Phe- Asp - Arg- Stop Making Proteins From DNA
Summary: DNA → RNA → Protein DNA = TACTCGATGGATTCGAACTCGATC RNA = AUGAGCUACCUAAGCUUGAGCUAG a.a = Meth- Ser- Tyr- Leu- Ser- Leu- Ser- stop Summary
Transcription has 3 main steps: Initiation Elongation Termination Transcription in More Detail
Promoter Transcription unit 5 3 3 5 Start point RNA polymerase Initiation
Initiation Each DNA sequence has a region called the promoter promoter – A region of DNA where RNA polymerase attaches and initiates transcription sometimes called a promoter gene After the promoter is recognized the RNA polymerase attaches to it RNA polymerase – an enzyme that adds nucleotides to the growing chain of RNA during transcription Once the polymerase is attached transcription can continue Transcription in More Detail
Elongation RNA polymerase moves along the DNA and adds nucleotides to the growing RNA molecule Transcription in More Detail
Termination Transcription continues until the RNA polymerase reaches a DNA sequence called a terminator Transcription in More Detail
The RNA sequence made by transcription is not ready for translation. It must first be modified. Pre-mRNA modification, called Gene Splicing The average length of a RNA molecule made by transcription is 8000 nucleotides. However, it takes only 1200 nucleotides to code for the average protein. What does this tell you? It means that the mRNA has long nucleotide sequences that don’t code for genes Preparing the RNA Sequence for Protein Production
introns – a noncoding segment of nucleic acid that lie between coding segments of nucleic acids exons – coding segments of nucleic acids that are eventually translated into amino acids Preparing the RNA Sequence for Protein Production
The introns need to be cut from the RNA molecule and the exons joined together to form a mRNA molecule with a continuous coding sequence that can go on to translation spliceosome – molecule that cuts the introns out and joins exons back together Preparing the RNA Sequence for Protein Production
We learned that DNA is converted into a long strand of pre-mRNA. The pre-mRNA strand is the then modified by gene splicing (cutting introns out) to get the mRNA strand that is carried to the cytoplasm for protein synthesis translation – the process of making polypeptides (proteins) using mRNA as a template Translation
Key terms to know codon – a sequence of 3 nitrogen bases in mRNA that code for a specific amino acid AUG – the start codon codon found on every functioning mRNA codes for the amino acid methionine UAA, UAG, or UGA – stop codons Translation
Key terms to know rRNA – consists of RNA nucleotides that join proteins to make up the ribosome Translation
Key terms to know tRNA – a single strand of about 80 RNA nucleotides that carries amino acids to the ribosome for protein synthesis Translation
3 A Amino acid attachment site C C 5 A C G C G C G U G U A A U U A U C G * G U A C A C A * A U C C * G * U G U G G * G A C C G * C * A G U G * * G A G C Hydrogen bonds G C U A G * A * A C * U A G A Anticodon (a) Two-dimensional structure. The four base-paired regions and three loops are characteristic of all tRNAs, as is the base sequence of the amino acid attachment site at the 3 end. The anticodon triplet is unique to each tRNA type. (The asterisks mark bases that have been chemically modified, a characteristic of tRNA.) Figure 17.14 The structure of transfer RNA (tRNA)
Key terms to know anticodon – a region on the tRNA consisting of 3 bases complementary to the codon of mRNA Translation
Amino acid attachment site 5 3 Hydrogen bonds A A G 3 5 Anticodon Anticodon (c) (b) Three-dimensional structure Symbol used in this book tRNA
Steps of Translation 1. Initiation
Initiation the ribosome binds to the mRNA at the start codon AUG the tRNA carrying the amino acid methionine binds to the mRNA strand where the start codon AUG is located Steps of Translation
Large ribosomal subunit P site 3 5 U C A Met Met 5 3 A G U Initiator tRNA GDP GTP E A mRNA 5 5 3 3 Start codon mRNA binding site Small ribosomal subunit Translation initiation complex A small ribosomal subunit binds to a molecule of mRNA. In a prokaryotic cell, the mRNA binding site on this subunit recognizes a specific nucleotide sequence on the mRNA just upstream of the start codon. An initiator tRNA, with the anticodon UAC, base-pairs with the start codon, AUG. This tRNA carries the amino acid methionine (Met). The arrival of a large ribosomal subunit completes the initiation complex. Proteins called initiation factors (not shown) are required to bring all the translation components together. GTP provides the energy for the assembly. The initiator tRNA is in the P site; the A site is available to the tRNA bearing the next amino acid. 1 2 Figure 17.17 The initiation of translation
Steps of Translation • Elongation
Elongation amino acids are add one by one to the first amino acid methionine translocation – the process of mRNA moving along the ribosome making the polypeptide chain elongation continues to occur until the polypeptide is complete Steps of Translation
1 Codon recognition. The anticodon of an incoming aminoacyl tRNA base-pairs with the complementary mRNA codon in the A site. Hydrolysis of GTP increases the accuracy and efficiency of this step. Amino end of polypeptide DNA TRANSCRIPTION mRNA Ribosome TRANSLATION Polypeptide E mRNA 3 Ribosome ready for next aminoacyl tRNA P A site site 5 2 GTP GDP 2 E E P A P A 2 Peptide bond formation. An rRNA molecule of the large Subunit catalyzes the formation of a peptide bond between the new amino acid in the A site and the carboxyl end of the growing polypeptide in the P site. This step attaches the polypeptide to the tRNA in the A site. GDP Translocation. The ribosome translocates the tRNA in the A site to the P site. The empty tRNA in the P site is moved to the E site, where it is released. The mRNA moves along with its bound tRNAs, bringing the next codon to be translated into the A site. 3 GTP E P A Figure 17.18 The elongation cycle of translation
Release factor Free polypeptide 5 3 3 3 5 5 Stop codon (UAG, UAA, or UGA) The two ribosomal subunits and the other components of the assembly dissociate. When a ribosome reaches a stop codon on mRNA, the A site of the ribosome accepts a protein called a release factor instead of tRNA. The release factor hydrolyzes the bond between the tRNA in the P site and the last amino acid of the polypeptide chain. The polypeptide is thus freed from the ribosome. 1 2 3 Figure 17.19 The termination of translation
Termination elongation continues until a stop codon is reached UAA, UAG, or UGA don’t code for an amino acid the polypeptide is released from the ribosome the mRNA and ribosome disassemble Steps of Translation
Release factor Free polypeptide 5 3 3 3 5 5 Stop codon (UAG, UAA, or UGA) The two ribosomal subunits and the other components of the assembly dissociate. When a ribosome reaches a stop codon on mRNA, the A site of the ribosome accepts a protein called a release factor instead of tRNA. The release factor hydrolyzes the bond between the tRNA in the P site and the last amino acid of the polypeptide chain. The polypeptide is thus freed from the ribosome. 1 2 3 Figure 17.19 The termination of translation
DNA TRANSCRIPTION mRNA Ribosome TRANSLATION Polypeptide Amino acids Polypeptide tRNA with amino acid attached Ribosome Trp Phe Gly tRNA C C C G G Anticodon A A A A G G G U G U U U C Codons 5 3 mRNA Figure 17.13 Translation: the basic concept Translation Video Real Time Translation
DNA = TACGTCAGCTCCTAGTACGCTACTG AUGCAGUCGAGGAUCAUGCGAUGAC Review pre-mRNA Intron Intron
DNA = TACGTCAGCTCCTAGTACGCTACTG AUGCAGUCGAGGAUCAUGCGAUGAC Review pre-mRNA Intron Intron mRNA = A U G C A C G A G A U G C G A U G A C
DNA = TACGTCAGCTCCTAGTACGCTACTG AUGCAGUCGAGGAUCAUGCGAUGAC Review pre-mRNA Intron Intron mRNA = A U G C A C G A G A U G C G A U G A C U A C a.a. = Met tRNA
DNA = TACGTCAGCTCCTAGTACGCTACTG AUGCAGUCGAGGAUCAUGCGAUGAC Review pre-mRNA Intron Intron mRNA = A U G C A C G A G A U G C G A U G A C U A C G U G a.a. = Met -- His tRNA