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Epidemiology of Infectious Diseases

Epidemiology of Infectious Diseases. M. Tevfik DORAK http://www.dorak.info ( www ). Infectious Disease Epidemiology: Major Differences. A case can also be an exposure Subclinical infections influence epidemiology Contact patterns play major role Immunity

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Epidemiology of Infectious Diseases

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  1. Epidemiology of Infectious Diseases M. Tevfik DORAK http://www.dorak.info (www)

  2. Infectious Disease Epidemiology: Major Differences • A case can also be an exposure • Subclinical infections influence epidemiology • Contact patterns play major role • Immunity • There is sometimes a need for urgency (www)

  3. Infectious disease epidemiology • Two or more populations • A case is a risk factor • The cause often known What is infectious disease epidemiology? • Epidemiology • Deals with one population • Risk  case • Identifies causes (www)

  4. What is infectious disease epidemiology? Two or more populations • Humans • Infectious agents • Helminths, bacteria, fungi, protozoa, viruses, prions • Vectors • Mosquito (protozoa-malaria), snails (helminths-schistosomiasis) • Blackfly (microfilaria-onchocerciasis) – bacteria? • Animals • Dogs and sheep/goats – Echinococcus • Mice and ticks – Borrelia (www)

  5. What is infectious disease epidemiology? A case is a risk factor … • Infection in one person can be transmitted to others (www)

  6. What is infectious disease epidemiology? The cause often known • An infectious agent is a necessary cause What is infectious disease epidemiology then used for? • Identification of causes of new, emerging infections, e.g. HIV, vCJD, SARS • Surveillence of infectious disease • Identification of source of outbreaks • Studies of routes of transmission and natural history of infections • Identification of new interventions (www)

  7. Concepts Specific to Infectious Disease Epidemiology Attack rate, immunity, vector, transmission, carrier, subclinical disease, serial interval, index case, source, exposure, reservoir, incubation period, colonization, generations, susceptible, non-specific immunity, clone, resistance, repeat episodes …

  8. Infectious Disease Definitions • Infectious diseases • Caused by an infectious agent • Communicable diseases • Transmission – directly or indirectly – from an infected person • Transmissible diseases • Transmission – through unnatural routes – from an infected person Note • Infections are often subclinical – infections vs infectious diseases! • Antonyms not well-defined • Non-communicable diseases – virus involved in pathogenesis of diabetes? • Chronic diseases – HIV? Tetanus Measles vCJD (www)

  9. Routes of transmission • Direct • Skin-skin • Herpes type 1 • Mucous-mucous • STI • Across placenta • toxoplasmosis • Through breast milk • HIV • Sneeze-cough • Influenza • Indirect • Food-borne • Salmonella • Water-borne • Hepatitis A • Vector-borne • Malaria • Air-borne • Chickenpox • Ting-borne • Scarlatina • Exposure • A relevant contact – depends on the agent • Skin, sexual intercourse, water contact, etc (www)

  10. (www)

  11. Some Pathogens that Cross the Placenta

  12. Modes of Disease Transmission

  13. Exposure to Infectious Agents No infection Clinical Sub-clinical Carrier Death Carrier Immunity No immunity Outcome (www)

  14. Dynamics of infectiousness Latent period Infectious period Non-infectious Susceptible Time Infection Infection Dynamics of disease Incubation period Symptomatic period Non-diseased Susceptible Time Timeline for Infection (www)

  15. T S P Susceptible S Immune S T Sub-clinical Clinical Transmission • Cases • Index – the first case identified • Primary – the case that brings the infection into a population • Secondary – infected by a primary case • Tertiary – infected by a secondary case (www)

  16. ill exposed Attack rate = Person-to-Person Transmission (www)

  17. Epidemiologic Triad Disease is the result of forces within a dynamic system consisting of: agent of infection host environment

  18. Factors Influencing Disease Transmission Agent Environment • Weather • Housing • Geography • Occupational setting • Air quality • Food • Infectivity • Pathogenicity • Virulence • Immunogenicity • Antigenic stability • Survival • Age • Sex • Genotype • Behaviour • Nutritional status • Health status Host (www)

  19. Epidemiologic Triad-Related Concepts Infectivity (ability to infect) (number infected / number susceptible) x 100 Pathogenicity (ability to cause disease) (number with clinical disease / number infected) x 100 Virulence (ability to cause death) (number of deaths / number with disease) x 100 All are dependent on host factors

  20. Predisposition to Infections (Host Factors) Gender Genetics Climate and Weather Nutrition, Stress, Sleep Smoking Stomach Acidity Hygiene

  21. Chain of Infection Horton & Parker: Informed Infection Control Practice(www)

  22. Infection Cycle of Schistosomiasis Peters: Tropical Medicine and Parasitology, 2001 (www)

  23. Infection Cycle of Leishmaniasis Lipoldova & Demand, 2006 (www)

  24. Iceberg Concept of Infection

  25. Infectious Agents Bacteria Viruses Fungi Protoctists / Protozoa Helminths

  26. Phylogenetic Classification of Bacteria Oxford Textbook of Medicine

  27. Phylogenetic Classification of Viruses Oxford Textbook of Medicine

  28. Prions Mabbott & MacPherson, Nat Rev Microbiol 2006 (www)

  29. Reservoirs A host that carries a pathogen without injury to itself and serves as a source of infection for other host organisms (asymptomatic infective carriers) (www)

  30. Reservoirs Humans {hepatitis} Other Vertebrates {zoonoses} Birds & Bats {histoplasmosis} NOT vectors

  31. Vectors A host that carries a pathogen without injury to itself and spreads the pathogen to susceptible organisms (asymptomatic carriers of pathogens)

  32. Vectors Other parasites have life cycles that involve intermediate organisms, or vectors, which carry disease-causing microorganisms from one host to another. The protozoan blood parasite that causes sleeping sickness, or trypanosomiasis, infects humans, cattle, and other animals. It uses the tsetse fly as a vector to carry it from one host to the next. When a tsetse fly bites an infected animal, it picks up the parasite when it sucks blood. When an infected fly bites another animal, the parasite enters the bloodstream and begins to reproduce in the new host.

  33. Arthropod Vectors Pathogen - Vector Viruses (Arbovirus) - Mosquitoes Bacteria (Yersinia) - Fleas Bacteria (Borrelia) - Ticks Rickettsias (R. prowazeki) - Lice, ticks Protozoa (Plasmodium) - Mosquitoes Protozoa (Trypanozoma) -Tsetse flies Helminths (Onchocerca) - Simulium flies

  34. Koch’s Postulates The same organism is present in every case It is isolated or grown in pure culture The disease can be reproduced in healthy animals after infection with pure culture The identical pathogen is reisolated from the experimental animals

  35. Koch’s Postulates

  36. Ecological Factors in Infections Altered environment {Air conditioning} Changes in food production & handling {intensive husbandry with antibiotic protection; deep-freeze; fast food industry} Climate changes {Global warming} Deforestation Ownership of (exotic) pets Air travel & Exotic journeys / Global movements Increased use of immunosuppressives/ antibiotics American Museum of Natural History Exhibition: Epidemic! The World of Infectious Disease (www)

  37. Infectious Disease Process Direct tissue invasion Toxins Persistent or latent infection Altered susceptibility to drugs Immune suppression Immune activation (cytokine storm)

  38. Mathematical Modelling in Infectious Disease Epidemiology

  39. probability of transmission per contact Reproductive Number, R0 A measure of the potential for transmission The basic reproductive number, R0, the mean number of individuals directly infected by an infectious case through the total infectious period, when introduced to a susceptible population R0 = p• c•d duration of infectiousness contacts per unit time Infection will ….. disappear, if R < 1 become endemic, if R = 1 become epidemic, if R > 1 (www)

  40. Reproductive Number, R0 • Useful summary statistic • Definition: the average number of secondary cases a typical infectious individual will cause in a completely susceptible population • Measure of the intrinsic potential for an infectious agent to spread (www)

  41. Reproductive Number, R0 • If R0 < 1 then infection cannot invade a population • implications: infection control mechanisms unnecessary (therefore not cost-effective) • If R0 > 1 then (on average) the pathogen will invade that population • implications: control measure necessary to prevent (delay) an epidemic

  42. Reproductive Number, R0 Use in STI Control R0 = p • c • d pcondoms, acyclovir, zidovudine c health education, negotiating skills D case ascertainment (screening, partner notification), treatment, compliance, health seeking behaviour, accessibility of services (www)

  43. What determines R0 ? • p, transmission probability per exposure – depends on the infection • HIV, p(hand shake)=0, p(transfusion)=1, p(sex)=0.001 • interventions often aim at reducing p • use gloves, screene blood, condoms c, number of contacts per time unit– relevant contact depends on infection • same room, within sneezing distance, skin contact, • interventions often aim at reducing c • Isolation, sexual abstinence d, duration of infectious period • may be reduced by medical interventions (TB, but not salmonella) (www)

  44. Immunity – herd immunity • If R0 is the mean number of secondary cases in a susceptible population, then R is the mean number of secondary cases in a population where a proportion, p, are immune R = R0 – (p • R0) • What proportion needs to be immune to prevent epidemics? If R0 is 2, then R < 1 if the proportion of immune, p, is > 0.50 If R0 is 4, then R < 1 if the proportion of immune, p, is > 0.75 • If the mean number of secondary cases should be < 1, then R0 – (p • R0) < 1 p > (R0 – 1)/ R0 = 1 – 1/ R0 • If R0 =15, how large will p need to be to avoid an epidemic? p > 1-1/15 = 0.94 • The higher R0, the higher proportion of immune required for herd immunity (www)

  45. Cases Time Endemic - Epidemic - Pandemic R > 1 • Endemic • Transmission occur, but the number of cases remains constant • Epidemic • The number of cases increases • Pandemic • When epidemics occur at several continents – global epidemic R = 1 R < 1 (www)

  46. Endemic vs Epidemic Number of Cases of a Disease Epidemic Endemic Time

  47. Levels of Disease Occurrence Sporadic level: occasional cases occurring at irregular intervals Endemic level: persistent occurrence with a low to moderate level Hyperendemic level: persistently high level of occurrence Epidemic or outbreak: occurrence clearly in excess of the expected level for a given time period Pandemic: epidemic spread over several countries or continents, affecting a large number of people (www)

  48. http://www.dorak.info

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