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CSFL Genome Database: Resources for Pea, Lentil, Faba Bean, and Chickpea Genetics, Genomics, and Breeding

A comprehensive resource providing genetic, genomics, and breeding information for pea, lentil, faba bean, and chickpea. Features easy-to-use interfaces and pre-loaded tools.

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CSFL Genome Database: Resources for Pea, Lentil, Faba Bean, and Chickpea Genetics, Genomics, and Breeding

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  1. Updates to the CSFL Genome Database: Resources for pea, lentil, faba bean and chickpea genetics, genomics and breeding www.coolseasonfoodlegume.org Sook Jung, Jodi L. Humann, Chun-Huai Cheng, Taein Lee, Ping Zheng, Morgan Frank, Deah McGaughey, Kristin Scott, Katheryn Buble, Jing Yu, Heidi Hough, Clare Coyne, Rebecca McGee, DorrieMain

  2. Why CSFL? • A one-stop resource for genetic, genomics and breeding information about pea, lentil, chickpea and faba bean • Common tools pre-configured/pre-loaded for use with pea, lentil, chickpea and faba bean • Easy-to-use interfaces that allow quick access to the data and tools

  3. What does CSFL have?

  4. CSFL Homepage

  5. Crop Overview Pages

  6. Data Searches

  7. Data Searches

  8. Available Tools

  9. BLAST

  10. BLAST

  11. JBrowse

  12. PathwayCyc • Pathway Tools analysis of C. arietinum CDC Frontier and C. reticulatumPI 489777 genomes • C. arietinum ICC 4958 in progress and will be available soon

  13. MapViewer • MapViewer will eventually replace CMapon CSFL • Similar to CMap, but uses the Chado data already in database • Access MapViewer from “Tools” menu or any genetic map details page • Comparative functions coming soon

  14. MapViewer

  15. MapViewer – Zoom and Pan Zoom and Pan

  16. MapViewer – Control Panel • Change linkage groups/maps • Change marker colors and which markers are visible • Hide/show ruler and marker positions

  17. MapViewer – Comparisons Coming in early 2018!

  18. Breeders Information Management System (BIMS) • Breeding data fully integrated with data in database • CSFL continuously updated with genomic data, QTL data, publicly available cultivar evaluation data and molecular genotypic data • New and better marker development • Compare trait data between private germplasm and publically available germplasm • Components of BIMS • Archive • Manage Breeding • Data Import, Edit and Download • Search and Compare • Field Book App Management • Data Analysis Tools • Breeding Decision Tools

  19. Data Import from Templates or FieldBook

  20. Manage Trials

  21. View the Data

  22. Funding and Acknowledgements

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