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BIOINFORMATICS DATABASES – ITESM – Dr. Victor Treviño

Excercises - Literature Databases (PubMed, EBI, and others). BIOINFORMATICS DATABASES – ITESM – Dr. Victor Treviño. Search the literature for Databases and Software tools related to SNP (single nucleotide polymorphism) Search Engine used? Query used?

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BIOINFORMATICS DATABASES – ITESM – Dr. Victor Treviño

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  1. Excercises - Literature Databases (PubMed, EBI, and others) BIOINFORMATICS DATABASES – ITESM – Dr. Victor Treviño

  2. Search the literature for Databases and Software tools related to SNP (single nucleotide polymorphism) Search Engine used? Query used? How many hits?, databases?Software tools? Write a brief summary Note: I don't know the answer Exercise

  3. SNP 13345 Single NucleotidePolymorphism27060 SNP software 500 SNP database424 Single NucleotidePolymorphism software 834 Single NucleotidePolymorphismdatabase 692 Single NucleotidePolymorphismdatabases980 Solution?

  4. Search the literature for ALL Databases and Software tools Note: I don't know the answer neither Exercise

  5. single nucleotide polymorphism[TIAB] databases[TI] 8 single nucleotide polymorphisms[TIAB] databases[TI] 15 single nucleotide polymorphism[TIAB] database[TI] 18 single nucleotide polymorphisms[TIAB] database[TI] 62 snp[TIAB] databases[TI] 22 snp[TIAB] database[TI] 72 snps[TIAB] database[TI] 80 snps[TIAB] databases[TI] 21 "Software"[Mesh] AND (SNP OR SNPS OR Single Nucleotide Polymorphism) 631 Improvement

  6. Anaysis of "Positive" Software Papers • "GALGO Trevino V" query • BLAST paper Major Topic 1990

  7. "Software"[MAJR] NOT "Software Design"[MH] NOT "Software Validation"[MH] NOT "Speech Recognition Software"[MH] AND Algorithms[MH] = 4058 Software[MH] AND Algorithms[MH] = 10271 Software[MH] AND Algorithms[MH] BLAST = 229 !!! *Software Mesh Term Query Issue

  8. Search the literature for papers from an author named "Chen X" • summarise • … Then, those published only on the Proteins Journal • summarise Exercise

  9. "Software"[MeSH Major Topic]=26383 (denoted as "*" in MEDLINE record MH field) "Software"[MAJR] NOT "Software Design"[MH] = 24670 "Software"[MAJR] NOT "Software Design"[MH] NOT "Software Validation"[MH] NOT "Speech Recognition Software"[MH] = 24124 "Software"[MAJR] NOT "Software Design"[MH] NOT "Software Validation"[MH] NOT "Speech Recognition Software"[MH] AND Software[TIAB] = 6220 *Software Mesh Term Query Issue

  10. What software/database is there for my topic of interest? Common Question

  11. Exercise Search the literature for Databases and Software tools related to SNP (single nucleotide polymorphism) NOW USING MESH TERMS How many hits?, databases? tools? Make a brief summary Note: Of course, I don't know the answer

  12. Exercise Search the literature for papers from an author named "Chen X" summarise … Then, those published only on the Proteins Journal summarise

  13. Exercise Search the literature for ALL Databases and Software tools Note: I don't know the answer neither

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