1 / 7

High-Throughput Analysis of Genomic Data [S6] E NRIQUE B LANCO

High-Throughput Analysis of Genomic Data [S6] E NRIQUE B LANCO. NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes. ChIPseq BIOINFORMATICS ANALYSIS. Quality Control. Peak Calling. Mapping. Visualization. QUALITY CONTROL. PROGRAM: FASTQC FORMATS: FASTQ QSEQ.

brier
Download Presentation

High-Throughput Analysis of Genomic Data [S6] E NRIQUE B LANCO

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. High-Throughput Analysis of Genomic Data [S6]ENRIQUE BLANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes

  2. ChIPseq BIOINFORMATICS ANALYSIS Quality Control Peak Calling Mapping Visualization High-Throughput Analysis of Genomic Data [S6] - ENRIQUE BLANCO 2013 eblanco@ub.edu

  3. QUALITY CONTROL • PROGRAM: • FASTQC • FORMATS: • FASTQ • QSEQ http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ High-Throughput Analysis of Genomic Data [S6] - ENRIQUE BLANCO 2013 eblanco@ub.edu

  4. MAPPING • PROGRAMS: • BOWTIE • GEM • ELAND • FORMATS: • ELAND • SAM Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing. Hoffman BG and Jones SJ. J Endocrinol. 2009 High-Throughput Analysis of Genomic Data [S6] - ENRIQUE BLANCO 2013 eblanco@ub.edu

  5. VISUALIZATION • PROGRAMS: • UCSC • GBROWSE • FORMATS: • WIG • BEDGRAPH S. Perez-Lluch, E. Blanco, A. Carbonell, D. Raha, M. Snyder, F. Serras and M. Corominas. Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Research 39:4628-4639. High-Throughput Analysis of Genomic Data [S6] - ENRIQUE BLANCO 2013 eblanco@ub.edu

  6. PEAK CALLING • PROGRAMS: • PEAKSEQ • MACS • FORMATS: • BED • GFF S. Perez-Lluch, E. Blanco, A. Carbonell, D. Raha, M. Snyder, F. Serras and M. Corominas. Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Research 39:4628-4639. High-Throughput Analysis of Genomic Data [S6] - ENRIQUE BLANCO 2013 eblanco@ub.edu

  7. High-Throughput Analysis of Genomic Data [S6]ENRIQUE BLANCO NUMBER OF SLIDES: 5 EXPECTED TIME: 15 minutes

More Related