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How to use GEO

How to use GEO. Ka-Lok Ng Department of Bioinformatics Asia University Taiwan. GEO datasets. Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo. GSE8351. GSE, GPL, GSM. GPL. GSM. GPL5452 – view full table. 67 samples - mainly HCC samples.

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How to use GEO

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  1. How to use GEO Ka-Lok Ng Department of Bioinformatics Asia University Taiwan

  2. GEO datasets • Go to http://www.ncbi.nlm.nih.gov/ • Select ‘GEO datasets’ • Keyword : Hepatoma cell lines, homo

  3. GSE8351

  4. GSE, GPL, GSM GPL GSM

  5. GPL5452 – view full table

  6. 67 samples - mainly HCC samples

  7. Sample GSM206985

  8. G000002 0.065540587 • G000003 0.053925988 • G000004 0.031904168

  9. Search GEO datasets for “GSE3536” Title : Hepatoma cell lines vs. Universal control 3

  10. GSE3536

  11. GPL2913 – view full table

  12. 36 samples

  13. GSM81024 HepG2 vs. Universal control 5

  14. GEO Profiles - http://www.ncbi.nlm.nih.gov/ Step2:在此鍵入你所想收尋之關鍵字如: GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession) Step1:選擇GEO Profiles

  15. Search result 可點進去看tissue分佈 查詢後，有些得出許多結果，依user所要的資料去選擇，用基因所對應的NM編號來選。

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