1 / 16

BioGRID: Biological General Repository for Interaction Datasets

Ben Bachman Georgia Institute of Technology 28 June, 2006. BioGRID: Biological General Repository for Interaction Datasets. Overview. Database of protein-protein interactions Removes redundancies Search protein of interest Retrieve primary information

chloe-levine
Download Presentation

BioGRID: Biological General Repository for Interaction Datasets

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Ben Bachman Georgia Institute of Technology 28 June, 2006 BioGRID: Biological General Repository for Interaction Datasets

  2. Overview • Database of protein-protein interactions • Removes redundancies • Search protein of interest • Retrieve primary information • Physical and genetic interaction data • Links to other databases • http://www.thebiogrid.org

  3. Features Overview • Realtime site statistics • Can search an organism by • Genebank ID • Entrez-Gene ID • SGD ID • Gene name • Links to all known related enzymes • Links to information in other databases

  4. Statistics

  5. Search Criteria

  6. Example Search

  7. Example Results

  8. Osprey • Visualization tool • Powered by BioGRID • Shows graphical relationships between proteins • Links to information included in BioGRID

  9. Features Overview • Add in known enzymes • Shows BioGRID data on the enzyme • Visualize links to related enzymes • Extended visualization • View information on relationship between enzymes • Links to database websites with more information

  10. Osprey Example

  11. Osprey Example

  12. Osprey Example

  13. Osprey Example

  14. Osprey Example

  15. Osprey Example

  16. Summary • BioGRID sometimes lacking in information, but instead displays error message • Very well manicured database • Osprey could use a way to find the path between two enzymes • A few small UI problems • Many useful features

More Related