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NP - Positive set

Training. NP catalogue. Input. NP - Positive set. Top ranked NPs. Genome. Negative Set . Negative Set . NP processing tools. Annotated. Negative Set . Negative set . Candidate NPs. Translated proteome. ML quality: Cross validation. NeuroPID. Full length ORFs.

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NP - Positive set

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  1. Training NP catalogue Input NP - Positive set Top ranked NPs Genome Negative Set Negative Set NP processing tools Annotated Negative Set Negative set Candidate NPs Translated proteome ML quality: Cross validation NeuroPID Full length ORFs prediction

  2. A B 1-log(p-value, t-test) 1-log(p-value, t-test)

  3. MRSRTSVLTSSLAFLYFFGIVGRSALAMEETPASSMNLQHYNN MLNPMVFDDTMPEKRAYTYVSEYKRLPVYNFGIGKRWIDTNDN KRGRDYSFGLGKRRQYSFGLGKRNDNADYPLRLNLDYLPVDNP AFHSQENTDDFLEEKRGRQPYSFGLGKRAVHYSGGQPLGSKRP NDMLSQRYHFGLGKRMSEDEEESSQR

  4. MRSRTSVLTSSLAFLYFFGIVGRSALAMEETPASSMNLQHYNN MLNPMVFDDTMPEKRAYTYVSEYKRLPVYNFGIGKRWIDTNDN KRGRDYSFGLGKRRQYSFGLGKRNDNADYPLRLNLDYLPVDNP AFHSQENTDDFLEEKRGRQPYSFGLGKRAVHYSGGQPLGSKRP NDMLSQRYHFGLGKRMSEDEEESSQR

  5. Cross validation performance

  6. Cross validation performance

  7. A B S. frugiperda (Fall armyworm) 5 H. armigera (Cotton bollworm) 6 S. gregorian (Desert locust ) 4 A. florea (Little honeybee) 0 M. rotundata (Alfalfa leafcutter bee) 1 C. floridanus (Florida carpenter ant) 2 A. echinatior (Leafcutter ant) 3 C

  8. D

  9. D

  10. Updates 5 7 2013

  11. SVM-SVC 16 GBR 79 RF 7 ExtraTree 8 1 4 2 2 11

  12. Apismellifera Thaumeledonegunteri GBR GBR 79 18 100% 100% 100% 100% 100% 86% 8 9 5 7 RF RF 75% 80% Ext-Tree Ext-Tree 60% 33% 42% 60% 10 16 SVM-SVC SVM-SVC

  13. Updates 5 7 2013

  14. A B S. frugiperda (Fall armyworm) 5 H. armigera (Cotton bollworm) 6 S. gregorian (Desert locust ) 4 A. florea (Little honeybee) 0 M. rotundata (Alfalfa leafcutter bee) 1 C. floridanus (Florida carpenter ant) 2 A. echinatior (Leafcutter ant) 3 C

  15. A B

  16. 66- 97 KRL....YDFG.........LG..............KRA..YsyvSEYKRL.............................pvYN..FGLGKR 98- 120 SKM....YGFG.........LG..............KR.......DG..RM...............................YS..FGLGKR 121- 164 DYD....Y.YGeededdqqaIGdedieesdvgdlmdKR..........DRL...............................YS..FGLGKR 165- 191 ARP....YSFG.........LG..............KRA..P...SGAQRL...............................YG..FGLGKR 192- 216 GGS...lYSFG.........LG..............KR........GDGRL...............................YA..FGLGKRPVN 222- 253 GRSsgsrFNFG.........LG..............KRS..D...DIDFRE...............................LEekFAEDKR 254- 316 .YPqehrFSFG.........LG..............KREveP...SELEAVrneekdnssvhdkknntndmhsgerikrslhYP..FGIRKL 347- 367 RRP....FNFG.........LG..............KRI..P........M...............................YD..FGIGKR 66- 97 KRL....YDFG.........LG..............KRA..YsyvSEYKRL........pvYN..FGLGKR 98-120 SKM....YGFG.........LG..............KR.......DG..RM..........YS..FGLGKR 121-164 DYD....Y.YGeededdqqaIGdedieesdvgdlmdKR..........DRL..........YS..FGLGKR 165-191 ARP....YSFG.........LG..............KRA..P...SGAQRL..........YG..FGLGKR 192-220 GGS...lYSFG.........LG..............KR........GDGRL..........YA..FGLGKRPVNS 221-253 GRSsgsrFNFG.........LG..............KRS..D...DIDFRE..........LEekFAEDKR 254-316 YPqehrFSFG.........LG..............KREveP...SELEAVrne(25)slhYP..FGIRKL 346-367 RRP....FNFG.........LG..............KRI..P........M..........YD..FGIGKR

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