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The DNA Bank Network

The DNA Bank Network. Gabriele Droege. Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin. Existing components. Source material / specimens. GBIF – Data Architecture. GBIF – Data Architecture. Wrappers

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The DNA Bank Network

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  1. The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin

  2. Existing components Source material / specimens

  3. GBIF – Data Architecture

  4. GBIF – Data Architecture Wrappers Transformation of individual database structures into a standard xml schema Enable „live“ connection to original data provider DarwinCore ABCD DiGIR = Digital Generic Information Retrieval BioCASe = Biological Collection Access Service ABCD = Access to Biological Collection Data

  5. DNA Bank Network The Data Architecture

  6. Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources

  7. Data architecture – DNA data • DNA Module • MySQL and PHP • Local use or with external server (web-based) • Several tools for entry and management of DNA data and customer requests • Reference to specimen data via wrappers • Specimen Tool for specimen data not available via GBIF

  8. DNA Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources DNA Module

  9. DNA Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources Web index/ Web portal DNA Module BioCASe ABCDDNA www.dnabank-network.org

  10. www.dnabank-network.org • Customers have to sign MTA • Partners work independent • Dynamically generated during web query aggregating data from multiple sources • April 2012: > 42.000 DNA and tissue samples available

  11. DNA Bank Network The Future

  12. GBIF records worldwide 311,209,813 georeferenced data

  13. GBIF records of current GGBN partners 9,299,217 georeferenced data

  14. Sustainability • Use of existing systems (e.g. GBIF, GenBank, BOLD, CoL) • BGBM: two new permanent positions (from July 2012) • BioCASe & ABCD - Jörg Holetschek • DNA Bank Network - Gabi Dröge   technical support for future GGBN data portal possible • DFG proposal (deadline 31. July 2012); DFG = Deutsche Forschungsgemeinschaft(German Research Foundation)

  15. DFG proposal • DFG = Deutsche Forschungsgemeinschaft (German Research Foundation) • Programme: Knowledge Transfer Projects • Deadline: 31. July 2012 • Transfer projects are based on results generated by DFG-funded research projects • Core of the project is a joint work programme, focusing on intensive mutual exchange of scientific knowledge • Funds for German partner only • Appropriate input by the application partner expected • Should be not more than one application partner • Discussion with GGBN-ISC and TF Data Standards

  16. DFG proposal • Working title: “Building the technical node of the Global Genome Biodiversity Network (GGBN)” • SI represents GGBN within the project • BGBM leads the technical node of GGBN • All GGBN partners could benefit: • Best practices and data workflows can be adopted by all GGBN partners • GGBN works independent and does not depend on the grant and vice versa

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