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The DNA Bank Network. Gabriele Droege. Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin. Existing components. Source material / specimens. GBIF – Data Architecture. GBIF – Data Architecture. Wrappers
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The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin
Existing components Source material / specimens
GBIF – Data Architecture Wrappers Transformation of individual database structures into a standard xml schema Enable „live“ connection to original data provider DarwinCore ABCD DiGIR = Digital Generic Information Retrieval BioCASe = Biological Collection Access Service ABCD = Access to Biological Collection Data
DNA Bank Network The Data Architecture
Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources
Data architecture – DNA data • DNA Module • MySQL and PHP • Local use or with external server (web-based) • Several tools for entry and management of DNA data and customer requests • Reference to specimen data via wrappers • Specimen Tool for specimen data not available via GBIF
DNA Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources DNA Module
DNA Data Architecture Provider xy Specimen databases DiGIR/BioCASe DarwinCore/ABCD Different voucher data sources Web index/ Web portal DNA Module BioCASe ABCDDNA www.dnabank-network.org
www.dnabank-network.org • Customers have to sign MTA • Partners work independent • Dynamically generated during web query aggregating data from multiple sources • April 2012: > 42.000 DNA and tissue samples available
DNA Bank Network The Future
GBIF records worldwide 311,209,813 georeferenced data
GBIF records of current GGBN partners 9,299,217 georeferenced data
Sustainability • Use of existing systems (e.g. GBIF, GenBank, BOLD, CoL) • BGBM: two new permanent positions (from July 2012) • BioCASe & ABCD - Jörg Holetschek • DNA Bank Network - Gabi Dröge technical support for future GGBN data portal possible • DFG proposal (deadline 31. July 2012); DFG = Deutsche Forschungsgemeinschaft(German Research Foundation)
DFG proposal • DFG = Deutsche Forschungsgemeinschaft (German Research Foundation) • Programme: Knowledge Transfer Projects • Deadline: 31. July 2012 • Transfer projects are based on results generated by DFG-funded research projects • Core of the project is a joint work programme, focusing on intensive mutual exchange of scientific knowledge • Funds for German partner only • Appropriate input by the application partner expected • Should be not more than one application partner • Discussion with GGBN-ISC and TF Data Standards
DFG proposal • Working title: “Building the technical node of the Global Genome Biodiversity Network (GGBN)” • SI represents GGBN within the project • BGBM leads the technical node of GGBN • All GGBN partners could benefit: • Best practices and data workflows can be adopted by all GGBN partners • GGBN works independent and does not depend on the grant and vice versa