1 / 12

The New Website of the Gene Ontology Consortium

The New Website of the Gene Ontology Consortium. Seth Carbon Chris Mungall , PhD | @ chrismungall Monica Munoz-Torres, PhD | @monimunozto Genomics Division, Lawrence Berkeley National Laboratory 16 March, 2014. UNIVERSITY OF CALIFORNIA. Outline. The New GOC Website

dillan
Download Presentation

The New Website of the Gene Ontology Consortium

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. The New Website of the Gene Ontology Consortium Seth Carbon Chris Mungall, PhD | @chrismungallMonica Munoz-Torres, PhD | @monimunozto Genomics Division, Lawrence Berkeley National Laboratory 16 March, 2014 UNIVERSITY OF CALIFORNIA

  2. Outline • The New GOC Website • Numbers, Organization, and Flow. • What’s new? • Menus • User Stories • Tags • Outreach Tools • Report from Outreach & Multimedia Breakout Group The New Website of the Gene Ontology Consortium Outline

  3. GOC Website • Reorganized • Consistent • Up to date • New licensing (CC-BY 4.0) and usage • Interactive and dynamic • Search and enrichment • Statistics • Remote content • Enforced workflows • Easy to maintain/update • Push content • Project pages • Highlighted terms • This is your site! 1. Numbers, Organization, and Flow.

  4. GO Website in Numbers • Starting material • >200 HTML files • >250 image files • 10 Editors • Including David OS, Jane, Kimberly, Paola, Rama, Ruth, and Tanya. • 143 Pages • Information • Articles, News • External Projects • Highlighted Terms 1. Numbers, Organization, and Flow.

  5. 2. Organization and Flow. 4. 5. Tools Information Articles, News External Projects Highlighted Terms 1. 3. 1. Numbers, Organization, and Flow.

  6. Organization and Flow. 6. Documentation Downloads User Stories Community Tools 8. 7. 10. 9. 1. Numbers, Organization, and Flow.

  7. Community The work of the GOC is only possible thanks to collaborations among members of a very active research community. • GO Projects • Related Projects • GO Forums • GO Wiki • Web Feeds • Help Desk Wiki @News4GO#GeneOntology The Reference Genome Annotation Project: AmiGOdisplays Comparison Graph for genes present in homolosets. PLoS Comput. Biol.. Jul 2009;5(7):e1000431. 1. Organization and Flow.

  8. What’s New? User Stories Represent a way of looking at the information that the Gene Ontology offers. • Everybody • Biocurator • Bioinformatician • Domain Specialist • Software Developer • Industry 2. What’s New?

  9. What Else Is New? • Tags • Assist in organizing and finding content. Change with content type. Article Information Page • Announcement • Event (Conference, Course/workshop, Meeting) • Feature (gene of the quarter, term of the month, publication, tip, tutorial) • Report • Software • Jobs • Warning • Analysis • Evidence • Formats • Guide • Navigation • Ontology • Software 2. What’s New?

  10. Outreach & Multimedia Breakout • To explain features in our websites and cover case studies, in videos that differentially address general and specialized scientific audiences. • Example questions: • What is a GO annotation and who makes a GO annotation? • How to use AmiGO 2. • Mechanics of Term Enrichment. • What the GO can offer, the types of available data, and how to access them. • What are Evidence Codes and how are they used? • Filtering with GO slims. 3. Outreach & Multimedia

  11. More from Seth and Chris. • New Documentation Pages, Exports of GO, and Retiring GO. (Mike, Seth, Chris) • Tool Registry and Enrichment Analysis. (Chris) • How to find tools • How to register tools • Term Enrichment More from Seth and Chris.

  12. Acknowledgments • Berkeley Bioinformatics Open-source Projects (BBOP), Lawrence Berkeley National Laboratory. Suzanna Lewis (PI). • The Gene Ontology Consortium is supported by the U41 grant No. HG002273 from NHGRI (NIH). BBOP is also supported by the Director, Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. • Images used with permission. NPG Lic. No. 3346711104169. • For your attention, thank you! The Gene Ontology Team Seth Carbon HeikoDietze Suzi Lewis Chris Mungall Moni Munoz-Torres BBOP Test drive the new GO Website at http://beta.GeneOntology.org Acknowledgments.

More Related