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Practice (sort of...)

Practice (sort of...). http://weblogo.berkeley.edu/. Graphical representation of an amino acid or nucleic acid multiple sequence alignment developed by Tom Schneider and Mike Stephens. Exercise: Identify conserved motif in the 50 bases upstream of 350 E. coli genes . Results. MOTIF Search.

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Practice (sort of...)

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  1. Practice (sort of...)

  2. http://weblogo.berkeley.edu/ Graphical representation of an amino acid or nucleic acid multiple sequence alignment developed by Tom Schneider and Mike Stephens

  3. Exercise: Identify conserved motif in the 50 bases upstream of 350 E. coli genes

  4. Results

  5. MOTIF Search http://motif.genome.jp/MOTIF2.html

  6. MOTIF Search • N-linked glycosylation is important for the folding of some of eukaryotic proteins. • Search the N-glycosylation site motif:Asn, followed by anything but Pro, followed by either Ser or Thr, followed by anything but Pro

  7. Results

  8. http://www.expasy.ch/prosite/

  9. Horseshoe: Leucine-rich repeat

  10. Domain architecture of proteins with Leucine-rich repeats Alignment of these proteins

  11. Extract the amino acid sequence of the following protein: AAW55471 cytochrome oxidase subunit I [Butisbutis] Duckbill sleepers (Butis butis) sometimes swim belly up.

  12. Good luck with the final assignment!

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