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Tubeness Plugin

Tubeness Plugin. Lee Kamentsky Broad Institute. Tubeness. Plugin for ImageJ Designed for 2-D and 3-D images http://homepages.inf.ed.ac.uk/s9808248/imagej/tubeness/

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Tubeness Plugin

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  1. Tubeness Plugin Lee Kamentsky Broad Institute

  2. Tubeness • Plugin for ImageJ • Designed for 2-D and 3-D images • http://homepages.inf.ed.ac.uk/s9808248/imagej/tubeness/ • Y. Sato, S. Nakajima, N. Shiraga, H. Atsumi, S. Yoshida, T. Koller, G. Gerig, and R. Kikinis, “Three-dimensional multi-scale line filter for segmentation and visualization of curvilinear structures in medical images,” Med Image Anal., vol. 2, no. 2, pp. 143-168, June 1998. Log transformed images, original on left, “Tubeness” on right

  3. Tubeness math

  4. Eigenvectors & values λ2 λ1

  5. Info & credits • More images: http://www.broadinstitute.org/~leek/tubeness/tubeness.html • Some math: http://en.wikipedia.org/wiki/Eigenvalue,_eigenvector_and_eigenspace • Other math from the paper

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