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Thoughts on the Third International Conference on Biomedical Ontology (ICBO) for the AVI

Thoughts on the Third International Conference on Biomedical Ontology (ICBO) for the AVI. July 21-25, 2012 Graz, Austria Suzanne Santamaria, DVM, MS Veterinary Terminologist (and Ontologist). Thoughts On Attending the ICBO. Gained knowledge Made connections Future work/collaboration.

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Thoughts on the Third International Conference on Biomedical Ontology (ICBO) for the AVI

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  1. Thoughts on the ThirdInternational Conference on Biomedical Ontology(ICBO) for the AVI July 21-25, 2012Graz, Austria Suzanne Santamaria, DVM, MSVeterinary Terminologist (and Ontologist) Vet Med Informatics Lab, Virginia Tech

  2. Vet Med Informatics Lab, Virginia Tech

  3. Thoughts On Attending the ICBO • Gained knowledge • Made connections • Future work/collaboration Vet Med Informatics Lab, Virginia Tech

  4. ICBO 2012 Vet Med Informatics Lab, Virginia Tech

  5. Knowledge • Organisms almost ubiquitous • Ontologies in action • Ontology developmentand maintenance • General advice Vet Med Informatics Lab, Virginia Tech portwallpaper.com

  6. Ontologies in action • Generate hypothesis • Large scale research • Predictive pharmacology • Access resources • Decision support with EHR Vet Med Informatics Lab, Virginia Tech

  7. Clinical Key • Access resources Vet Med Informatics Lab, Virginia Tech

  8. Smart Searching System • Access resources Find It video Smart Slide video Vet Med Informatics Lab, Virginia Tech

  9. Disease-Symptom Ontology • Decision support with EHR Vet Med Informatics Lab, Virginia Tech

  10. Ontology Development and Maintenance • Check class names • Agile ontology engineering • Visualization Vet Med Informatics Lab, Virginia Tech

  11. BioMixer • Visualization Vet Med Informatics Lab, Virginia Tech

  12. General • Look outward not inward • Certificate of ontology in works • Standards into ontologies • Panel on finding users of ontologies • All ontologies a work in progress! Vet Med Informatics Lab, Virginia Tech

  13. Connections Vet Med Informatics Lab, Virginia Tech

  14. Future work • ACO requests, annexes? • Herd, fledgling, yearling birds • Non human primate, non human organism • Adult squirrel, adult mouse • ACO on Bioportal? • “Lives in” relation • Vet involvement • What we do is paper-worthy Vet Med Informatics Lab, Virginia Tech

  15. Summary • Good experience • ICBO and OBO are relevant, important, and evolving • Seem open to animal work • Animal work already important! • Continue to contribute and participate Vet Med Informatics Lab, Virginia Tech

  16. ICBO 2013 - Montreal Photo Credit: Intelligent Travel,National Geographic Photo Credit: The Montréal Buzz Vet Med Informatics Lab, Virginia Tech

  17. References ICBO 2012 • http://kr-med.org/icbofois2012/icbo.htm • Links to papers on left hand side NCBO Bioportal • Multi-ontology browser and visualization, etc. • http://bioportal.bioontology.org/ ClinicalKey • ClinicalKey: Terminology driven Semantic Search. SivaramArabandi and Helen Moran • http://www.clinicalkey.com/ Smart Searching System • Smart Searching System for Biomedical Information. Hong-Woo Chun, et al. • http://59.27.71.173/ (intro in Korean; search in English and Korean) Disease-Symptom Ontology • Interpreting Patient Data using Medical Background Knowledge. HeinerOberkampf, et al. Vet Med Informatics Lab, Virginia Tech

  18. References • BioMixer: Visualizing Mappings of Biomedical Ontologies. Elena Voyloshnikova, et al. • Requirements and Strategy for the Development of a Pediatric Drug Ontology. Rachel Richesson, et al. • OWL Representation of Drug Activities on Biological Systems. Samuel Croset. • Developing the Animals in Context Ontology. Suzanne Santamaria, et al. Vet Med Informatics Lab, Virginia Tech

  19. References • The SWO Project: A Case Study of Applying Agile Ontology Engineering Methods in Community Driven Ontologies. Maria Copeland, et al. • Checking Class Labels against Naming Conventions: First experience with the OntoCheck Protégé Plugin. Daniel Schober, et al. • Teaching Good Biomedical Ontology Design. Martin Boeker, et al. Vet Med Informatics Lab, Virginia Tech

  20. Acknowledgement Thank you to AVI for the travel support to attend the conference Vet Med Informatics Lab, Virginia Tech

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