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Biomedical Informatics Update and Tools Arthur Berg, PhD

Biomedical Informatics Update and Tools Arthur Berg, PhD. Bioinformatics Core Services. Focused Technologies Candidate genes Functional SNPs Focus PCR array Analytical Methods Genetic association Biomarker analysis CNV analysis Multiple hypothesis correction Genetic signatures

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Biomedical Informatics Update and Tools Arthur Berg, PhD

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  1. Biomedical Informatics Update and Tools Arthur Berg, PhD

  2. Bioinformatics Core Services • Focused Technologies • Candidate genes • Functional SNPs • Focus PCR array • Analytical Methods • Genetic association • Biomarker analysis • CNV analysis • Multiple hypothesis correction • Genetic signatures • Predictive models • Pathway/GO analysis • Haplotype analysis • Gene-environment interaction • Annotating NGS Data • Whole genome • Exome • ChIP-seq • TCGA (sequence & GWAS) • Other Genome-Wide Data Structures • Gene expression array • SNP array • Proteomics (iTRAQ) • Methylation array • Exon array • Novel Methodology

  3. Clinical Informatics Research Core Arthur Berg, PhD Lab values Billing codes Medications Payer data Admission data Diagnosis codes Diagnosis tests Physician provider Consults Patient education Robert Aronoff, MD Ben Tshudy, BS The Clinical Informatics Research Core provides services to perform electronic health record data extraction for research use in a manner that is IRB-compliant and insures the privacy and security of patient data. • Enterprise Data Warehouse • i2b2 • Health Facts Arthur Berg, PhD The Clinical Informatics Research Core provides services to perform electronic health record data extraction for research use in a manner that is IRB-compliant and insures the privacy and security of patient data. Arthur Berg, PhD The Clinical Informatics Research Core provides services to perform electronic health record data extraction for research use in a manner that is IRB-compliant and insures the privacy and security of patient data. Arthur Berg, PhD The Clinical Informatics Research Core provides services to perform electronic health record data extraction for research use in a manner that is IRB-compliant and insures the privacy and security of patient data. Robert Aronoff, MD Robert Aronoff, MD Robert Aronoff, MD Ben Tshudy, BS Ben Tshudy, BS Ben Tshudy, BS

  4. Other Informatics Services & Tools • REDCap • New CoM/IRB Policy on Data Security and Integrity – in essence, all investigator initiated studies should be using REDCap • free, secure, fast, flexible, multi-site access, customizable, auto-validation, branching logic, calculated fields, de-identified export,… • Profiles(profiles.psu.edu) • Find potential collaborators • Find potential mentors • Add new expertise to your team • Reveal new directions for your research

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