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Jiten Bhagat University of Manchester jiten.bhagat@manchester.ac.uk @jitenbhagat

myExperiment A Social VRE for Research Objects. Jiten Bhagat University of Manchester jiten.bhagat@manchester.ac.uk @jitenbhagat. JISC Roadshow | February 2010 | Liverpool, UK. Social | Web 2.0 | VRE | Repository ... for Research Objects. Research Objects

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Jiten Bhagat University of Manchester jiten.bhagat@manchester.ac.uk @jitenbhagat

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  1. myExperiment A Social VRE for Research Objects Jiten Bhagat University of Manchester jiten.bhagat@manchester.ac.uk @jitenbhagat JISC Roadshow | February 2010 | Liverpool, UK

  2. Social | Web 2.0 | VRE | Repository ... for Research Objects

  3. Research Objects A resource or set of resources that have some kind of scientific intent and purpose

  4. Scientific Workflows as curated Research Objects Collections as curated Research Objects

  5. Scientific Workflows • Experimental protocols • Automation of data flow • Linking up data sets and iteration over large data sets • Data gathering and annotation pipelines • Data analysis from distributed tools • Data mining and knowledge management • Hypothesis generation and modelling • Literature mining • … and so on “Pathways from Diff Expressed Genes” Paul Fisher http://www.myexperiment.org/workflows/19

  6. Since its public launch in 2007, myExperiment has established the largest collection of scientific workflows publicly available. Over 500 public workflows (900+ total)

  7. Tailored to the needs of Researchers

  8. Making it really easy to... Store | Share | Discover | Curate | Attribute ... Research Objects

  9. Build communities | Form relationships

  10. Share your workflows and files Find people and make friends Control access to your workflows and files Create and join groups of similar interests Build your profile and reputation Find workflows and files that others have shared Have discussions and collaborate Maintain and use different versions of workflows • Execute workflows directly within myExperiment • (if you have access to a remote Taverna enactor) Tag and rate workflows and files Write reviews and comments Build packs of related content Reuse and repurpose workflows (and other files!) Send messages to other people on myExperiment

  11. Emphasis on the special requirements of researchers... Ownership | Credit | Attribution | Licensing | Visibility | Sharing

  12. Collecting together different types of research assets... Workflows | Data | Results | Examples | Provenance | Tags | Documentation | Papers | Websites | Images

  13. Packs

  14. DEMO

  15. Functionality can be accessed through simple RESTfulAPIs... Wikis | Web apps | Desktop tools | Workbenches | Web services | Google gadgets | Facebook | Mashups | Other interfaces

  16. Google Gadgets

  17. Facebook

  18. Silverlight

  19. TavernaPlugins Bringing myExperiment to the Taverna user

  20. Windows 7

  21. Thank You

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