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ninspect: volume inspection

Problems !!. ninspect: volume inspection. ninspect -i HUVA01084678_spgr.nhdr -o HUVA01084678_spgr.png. ninspect -i HUVA65941846_realigned.nhdr -o HUVA65941846_realigned.png. Red: mean Green: variance Blue: maximum. Getting NRRD into Slicer now.

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ninspect: volume inspection

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  1. Problems !! ninspect: volume inspection ninspect -i HUVA01084678_spgr.nhdr -o HUVA01084678_spgr.png ninspect -i HUVA65941846_realigned.nhdr -o HUVA65941846_realigned.png Red: mean Green: variance Blue: maximum

  2. Getting NRRD into Slicer now • Slicer uses ITK IOFactory with NrrdIO. That interface is being improved to carry meta-info into ITK representation. Until then: • Slicer 2.5: convert to VTK structured points: unu save -i vol.nrrd -f vtk -o vol.vtk • Pre-Slicer 2.5: make into raw slices: unu dice -i vol.nrrd -a 2 -o ./ • Pre-compiled command-line executables: http://teem.sf.net/nrrd/namic.html new version (w/ Windows binaries) ~ next week

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