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SPM Software & Resources

SPM Software & Resources. Wellcome Trust Centre for Neuroimaging University College London. SPM Course London, October 2009. Image time-series. Statistical Parametric Map. Design matrix. Spatial filter. Realignment. Smoothing. General Linear Model. Statistical Inference. RFT.

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SPM Software & Resources

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  1. SPM Software & Resources Wellcome Trust Centre for Neuroimaging University College London SPM Course London, October 2009

  2. Image time-series Statistical Parametric Map Design matrix Spatial filter Realignment Smoothing General Linear Model StatisticalInference RFT Normalisation p <0.05 Anatomicalreference Parameter estimates

  3. Software: SPM8 • Open Source academic freeware (under GPL) • Documented and informally supported • Requirements: • MATLAB: 7.1 (R14SP3) to 7.9 (R2009b)no toolboxes (EEG/MEG requires ‘signal’) • Supported platforms (MEX files): • File Formats: • Images: NIfTI-1 (& Analyze, DICOM) • Surface meshes: GIfTI • M/EEG: most manufacturers (with FieldTrip’s fileio) Mac Intel (32 and 64 bit) Linux (32 and 64 bit) Windows (32 and 64 bit)

  4. SPM Interface

  5. SPMweb • Introduction to SPM • SPM distribution: SPM2, SPM5, SPM8 • Documentation & Bibliography • SPM email discussion list • SPM short course • Example data sets • SPM extensions http://www.fil.ion.ucl.ac.uk/spm/

  6. SPM Toolboxes • User-contributed SPM extensions:http://www.fil.ion.ucl.ac.uk/spm/ext/

  7. SPM Documentation SPM Books:Human Brain Function I & II Statistical Parametric Mapping Peer reviewed literature Online help & function descriptions SPM Manual

  8. SPM Online Bibliography

  9. External Resources • SPM @ Wikipedia http://en.wikipedia.org/wiki/Statistical_parametric_mapping • SPM @ Scholarpedia http://www.scholarpedia.org/article/SPM • SPM @ WikiBookshttp://en.wikibooks.org/wiki/SPM • MRC-CBU Imaging/MEG wiki http://imaging.mrc-cbu.cam.ac.uk/imaging/CbuImaging http://imaging.mrc-cbu.cam.ac.uk/meg • SPM @ NITRC http://www.nitrc.org/projects/spm/

  10. SPM Mailing List • spm@jiscmail.ac.uk • Web home page • http://www.fil.ion.ucl.ac.uk/spm/support/ • Archives, archive searches, instructions • Subscribe • http://www.jiscmail.ac.uk/ • email jiscmail@jiscmail.ac.uk • join spm Firstname Lastname • Participate & learn • email spm@jiscmail.ac.uk • Monitored by SPMauthors • Usage queries, theoretical discussions, bug reports, patches, techniques, &c… http://www.fil.ion.ucl.ac.uk/spm/support/ spm@jiscmail.ac.uk

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