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Te Pas et al Additional File 3. Detailed graphical representation of the main pathway results. Explanation to read the Figures. Circles – denote genes with data on the microarray Boxes – indicate regulated processes / other pathways Colour code No colour: no up or down regulation
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Te Pas et alAdditional File 3 Detailed graphical representation of the main pathway results
Explanation to read the Figures • Circles – denote genes with data on the microarray • Boxes – indicate regulated processes / other pathways • Colour code • No colour: no up or down regulation • Green: up regulation • Red: down regulation • Blue: probably regulated, direction uncertain
Adherens junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Adherens junctionLine differences control / infected Exp 3: control Exp 4: infected
Adipocytokine signaling Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Adipocytokine signaling Line differences control / infected Exp 3: control Exp 4: infected
Aminosugars metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Aminosugars metabolism Line differences control / infected Exp 3: control Exp 4: infected
Androgen and Estrogen metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Androgen and Estrogen metabolismLine differences control / infected Exp 3: control Exp 4: infected
ApoptosisLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
ApoptosisLine differences control / infected Exp 3: control Exp 4: infected
Beta-Alanine metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Beta-Alanine metabolism Line differences control / infected Exp 3: control Exp 4: infected
Arachidonic acid metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Arachidonic acid metabolismLine differences control / infected Exp 3: control Exp 4: infected
Axon guidanceLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Axon guidanceLine differences control / infected Exp 3: control Exp 4: infected
B cell receptor signaling Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
B cell receptor signaling Line differences control / infected Exp 3: control Exp 4: infected
Benzoate degradation via CoA ligationLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Benzoate degradation via CoA ligationLine differences control / infected Exp 3: control Exp 4: infected
Bile acid biosynthesisLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Bile acid biosynthesisLine differences control / infected Exp 3: control Exp 4: infected
Caprolactam degradation Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Caprolactam degradation Line differences control / infected Exp 3: control Exp 4: infected
Cell adhesion molecules Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Cell adhesion molecules Line differences control / infected Exp 3: control Exp 4: infected
Cell communication / Cell junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Cell communication / Cell junctionLine differences control / infected Exp 3: control Exp 4: infected
Circadian rhythmLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Circadian rhythmLine differences control / infected Exp 3: control Exp 4: infected
Complement and Coagulation cascadesLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Complement and Coagulation cascadesLine differences control / infected Exp 3: control Exp 4: infected
Cytokine-cytokine receptor interactionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Cytokine-cytokine receptor interactionLine differences control / infected Exp 3: control Exp 4: infected
Dorso-ventral axis formationLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Dorso-ventral axis formationLine differences control / infected Exp 3: control Exp 4: infected
Fatty acid metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Fatty acid metabolismLine differences control / infected Exp 3: control Exp 4: infected
Focal adhesionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Focal adhesionLine differences control / infected Exp 3: control Exp 4: infected
Gap junctionLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Gap junctionLine differences control / infected Exp 3: control Exp 4: infected
Glutatione metabolismLine differences reaction to Salmonella Exp 1: line A Exp 2: line B
Glutatione metabolismLine differences control / infected Exp 3: control Exp 4: infected
Glycerolipid metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Glycerolipid metabolism Line differences control / infected Exp 3: control Exp 4: infected
Gly, Ser, Thr metabolism Line differences reaction to Salmonella Exp 1: line A Exp 2: line B
Gly, Ser, Thr metabolism Line differences control / infected Exp 3: control Exp 4: infected