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Using BIBtex

Using BIBtex. Making references in LaTeX (fish.tex). documentclass {article} begin{document} emph {My mother} is a underline{fish} cite{WF}. begin{ thebibliography }{99} bibitem {WF} William Faulkner, emph {As I Lay Dying} end{ thebibliography } end{document}.

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Using BIBtex

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  1. Using BIBtex

  2. Making references in LaTeX(fish.tex) \documentclass{article} \begin{document} \emph{My mother} is a \underline{fish} \cite{WF}. \begin{thebibliography}{99} \bibitem{WF} William Faulkner, \emph{As I Lay Dying} \end{thebibliography} \end{document}

  3. Need to compile the document twice • Because we are using symbolic references, e.g., \cite{WF}, • a second pass is necessary • The second pass will resolve references

  4. Problem with this method • User is burdened with deciding how to format article titles, journal names, proceeding references • Difficult to reuse references in other documents

  5. Quick BibTex Tutorial

  6. BibTex Tutorial • Why do you want to learn BibTex? • Nuts and Bolts of BibTex • Examples

  7. Why you want to learn BibTex • Complements LaTeX documents by managing bibliography and references • Minimizes the drudgery of formatting, numbering, and referencing • Disadvantage: • Steep Learning Curve

  8. The BibTex Process • Create a BibTex file with Reference entries • Get a *.bst file (bibliographic style file) • “Compile” or “Build” your LaTeX document to create an *.aux file • Run BibTeX on your LaTeX file • Run LaTeX twice on your updated file • View the dvi or pdf file

  9. Types of Documents BibTex can handle • ARTICLE • BOOK • BOOKLET • INBOOK • INCOLLECTION • INPROCEEDINGS • MANUAL • MISC • PHDTHESIS • PROCEEDINGS • TECHREPORT • UNPUBLISHED

  10. Each Document type can have the following entries • address • author • booktitle • chapter • crossref • edition • editor • howpublished • institution • journal • key • language • month • note • number • organization • pages • publisher • school • series • title • type=“Ph.D. dissertation” • volume • year

  11. Sample BibTex Book Entry(mybib.bib) @BOOK{Press, author="W.H. Press", title="Numerical Recipes in C: The Art of Scientific Computing", publisher="Cambridge University Press", year=1992, }

  12. Sample BibTex Technical Report Entry @TECHREPORT{Berk, author="Lex A. Berk and L.S. Bernstein and D.C. Robertson", title="MODTRAN: a moderate resolution model for LOWTRAN 7", number="GL-TR-89-0122", institution="Spectral Science", address = "Burlington, MA", year = 1989 }

  13. Sample BibTex Ph.D. Dissertation Entry @PHDTHESIS{Kuo, author="Jan-Tai Kuo", title="The Influence of Hydrodynamic Transport on Phytoplankton Dynamics in Homogeneous Lakes", school="Cornell University", address="Ithaca, NY", year=1981, }

  14. Sample BibTex Master’s Thesis Entry @MASTERSTHESIS{Knobelspiesse, author="Kirk D. Knobelspiesse", title="Atmospheric Compensation for SeaWIFS Images of Lake Superior Utilizing Spatial Information", school="Rochester Institute of Technology", addess="Rochester, NY", month=Sep, year=2000, }

  15. Sample BibTex Article Entry @ARTICLE{Vodacek, author="Anthony Vodacek and F.E. Hoge and R.N. Swift and J.K. Yungel and E.T. Peltzer and N.V. Blough", title="The use of in situ and airborne fluorescence measurements to determine UV absorption coefficients and DOC concentrations in surface waters", journal="Limnology and Oceanography", volume=40, number=2, year=1995, pages="411--415", }

  16. Sample BibTex Booklet Entry @BOOKLET{Sherwood, author="D.A. Sherwood", title="Phosphorus Loads Entering Long Pond, A Small Embayment of Lake Ontario near Rochester, New York", howpublished="USGS Fact Sheet 128-99", pages=4, month="November", year=1999, }

  17. Sample BibTex Proceedings Entry @INPROCEEDINGS{Stoermer, author="E.F. Stoermer", title="Nearshore phytoplankton populations in the Grand Haven, Michigan vicinity during thermal bar conditions", booktitle="Proceedings of the 11th Conference on Great Lakes Research", pages="137--150", year=1968, }

  18. Sample BibTex Manual Entry @MANUAL{RSI, author="RSI", title="ENVI User's Guide", publisher="Reasearch Systems Incorporated", organization="Research Systems Incorporated", howpublished="PDF File", address="Boulder, CO", month="September", year=2001, }

  19. Different Formatting Styles • To invoke a particular style, go to • http://www.ctan.org • Document styles are defined in *.sty files • mla.sty • bmsplain.sty • Bibliography styles are defined in *.bst files • mla.bst • amsplain.bst

  20. To invoke these styles in your document • Copy them to your current working directory with your LaTeX and BibTex document • Edit your LaTeX file to appropriately reference these style guides

  21. Sample LaTeX document listing Bibliography in MLA Style (bib.tex) \documentclass{report} \usepackage{mla} \begin{document} \bibliographystyle{mla} \bibliography{mybib} \nocite{*} \end{document}

  22. Commands to Build and View Document To use xdvi viewer % latex bib.tex % bibtex bib.aux % latex bib.tex % latex bib.tex % xdvi bib.dvi

  23. Sample LaTeX document listing Bibliography in AMS Style (bib.tex) \documentclass{report} \begin{document} \bibliographystyle{amsplain} \bibliography{mybib} \nocite{*} \end{document}

  24. To include only cited articles we remove the \nocite{*} command \documentclass{report} \begin{document} We want to get the documents \cite{RSI} and \cite{Kuo} for our collection \bibliographystyle{amsplain} \bibliography{mybib} \end{document}

  25. Cross-referencing in Proceedings @PROCEEDINGS{Narayanan, editor="Ram Mohan Narayanan and James E. Kalshoven, Jr.", title="Advances in Laser Remote Sensing for Terrestrial and Oceanographic Applications", booktitle="Proceeding of SPIE", publisher="SPIE", volume=3059, year=1997, }

  26. Article in Proceedings @INPROCEEDINGS{Ulrich, author="B.L. Ulrich and P. Lacovara and S.E. Moran and M.J. DeWeert", title="Recent results in imaging lidar", crossref="Narayanan", pages="95--108", }

  27. Miscellaneous LaTeX Topics

  28. Comments in LaTeX % • Ignores the rest of the line

  29. To protect special characters • Use the \ character • e.g. My\_Cat.raw • To typeset a section as typed \begin{verbatim} \end{verbatim}

  30. Verbatim command • OK for small sections that can be typed into document • What about including entire source code of programs • Use verbatim package

  31. Including Source code in LaTeX documents \documentclass{article} \usepackage{verbatim} \begin{document} \begin{equation} \label{E:sum} s = \sum_{i=1}^{n}x_{i} \end{equation} The code as implemented in idl in vectorized form looks like \verbatiminput{sum.pro} \end{document}

  32. Including image graphics into you LaTeX document • Need to convert your image graphics into EPS • For images, use pnmtops, e.g. % pnmtops –norotate –nosetpage MyCat.pgm > MyCat.ps • -norotate keeps from auto-rotating the image • -nosetpage keeps from setting to a specific device • Need to include an extension package to LaTeX called graphics using command \usepackage{graphics}

  33. Image Graphics Example(image.tex) \documentclass{article} \usepackage{graphics} \begin{document} \begin{figure} \includegraphics{MyCat.ps} \caption{This is My Cat} \label{F:MyCat} \end{figure} \end{document}

  34. Flowchart Figures • Create Flowchart in PowerPoint • Export as a bmp file • Convert from bmp to postscript % bmptoppm figure.bmp | pnmtops –norotate –nosetpage > figure.ps • OR User xfigbecause it will export to EPS • Shareware utility called WMF2EPS • Windows clipboardobjects toEPS

  35. Because current pdflatex cannot include Encapsulated Postscript Files (EPS)… • Need to go from dvi to postscript to pdf using the following commands % dvips image.dvi % ps2pdf image.ps • Some degradation in quality is observed

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