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A/goose/Guangdong/1/1996. A/HK/212/2003. 90. A/Viet Nam/1203/2004. A/Indonesia/5/2005. A/Indonesia/7/2005. 100. A/chicken/Manipur/NIV9743/2007. A/duck/Niger/914/2006. 82. 99. A/chicken/Nigeria/1047-8/2006. 100. A/cygnus olor/Croatia/1/2005. A/guinea fowl/Shantou/1341/2006.

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  1. A/goose/Guangdong/1/1996 A/HK/212/2003 90 A/Viet Nam/1203/2004 A/Indonesia/5/2005 A/Indonesia/7/2005 100 A/chicken/Manipur/NIV9743/2007 A/duck/Niger/914/2006 82 99 A/chicken/Nigeria/1047-8/2006 100 A/cygnus olor/Croatia/1/2005 A/guinea fowl/Shantou/1341/2006 A/Bar-headed Goose/Qinghai/65/2005 A/mallard/Italy/835/2006 72 A/swan/Slovenia/760/2006 A/chicken/Nigeria/641/2006 A/cygnus olor/Italy/742/2006 94 A/cygnus cygnus/Iran/754/2006 A/chicken/Maharashtra/7979/2006 A/chicken/Rawalakot/NARC2441A/2006 93 A/chicken/Afghanistan/1207/2006 96 A/houbara bustard/Saudi Arabia/6732-1/2007 100 A/saker falcon/Kuwait/0286/2007 A/chicken/West Bengal/142121/2008 99 A/chicken/West Bengal/81010/2008 95 A/chicken/Assam/140187/2008 93 99 A/chicken/West Bengal/100879/2008 85 A/duck/Tripura/103597/2008 94 A/chicken/West Bengal/155505/2009 A/Bangladesh/207095/2008 84 A/chicken/West Bengal/239022/2010* 100 A/chicken/West Bengal/239020/2010* 86 A/chicken/West Bengal/82613/2008 99 A/chicken/West Bengal/80995/2008 74 A/chicken/India/WB-NIV2653/2008 A/chicken/West Bengal/106181/2008 A/chicken/West Bengal/193936/2009 A/chicken/West Bengal/162642/2009 89 A/chicken/West Bengal/148713/2008 100 A/chicken/Sikkim/151464/2009 A/chicken/India/WB-NIV92456/2009 0.01 A/chicken/West Bengal/170564/2009 73 Supplementary Figure S1 (a)

  2. A/goose/Guangdong/1/1996 A/Indonesia/7/2005 100 A/Indonesia/5/2005 A/Viet Nam/1203/2004 98 A/HK/212/2003 A/chicken/Nigeria/1047-8/2006 100 92 A/duck/Niger/914/2006 A/cygnus olor/Croatia/1/2005 A/chicken/Manipur/NIV9743/2007 82 A/guinea fowl/Shantou/1341/2006 A/Bar-headed Goose/Qinghai/65/2005 A/chicken/Nigeria/641/2006 83 A/mallard/Italy/835/2006 95 A/swan/Slovenia/760/2006 88 A/chicken/Maharashtra/7979/2006 A/cygnus olor/Italy/742/2006 88 A/cygnus cygnus/Iran/754/2006 94 A/chicken/Rawalakot/NARC2441A/2006 A/chicken/Afghanistan/1207/2006 76 A/houbara bustard/Saudi Arabia/6732-1/2007 91 A/saker falcon/Kuwait/0286/2007 100 A/black nested grebe/Germany/R1393/2007 A/duck/Tripura/103597/2008 95 96 A/chicken/Assam/140187/2008 97 A/chicken/West Bengal/100879/2008 84 A/chicken/West Bengal/155505/2009 A/Bangladesh/207095/2008 95 A/chicken/West Bengal/239022/2010* 100 A/chicken/West Bengal/239020/2010* 75 A/chicken/West Bengal/80995/2008 85 A/chicken/West Bengal/82613/2008 A/chicken/India/WB-NIV2653/2008 A/chicken/West Bengal/142121/2008 95 A/chicken/West Bengal/81010/2008 A/chicken/West Bengal/106181/2008 A/chicken/West Bengal/148713/2008 98 A/chicken/West Bengal/193936/2009 89 A/chicken/West Bengal/162642/2009 A/chicken/Sikkim/151464/2009 A/chicken/India/WB-NIV92456/2009 0.01 A/chicken/West Bengal/170564/2009 98 (b)

  3. A/goose/Guangdong/1/1996 A/Viet Nam/1203/2004 A/HK/212/2003 A/Indonesia/7/2005 100 A/Indonesia/5/2005 A/chicken/Nigeria/1047-8/2006 88 84 87 A/duck/Niger/914/2006 75 A/cygnus olor/Croatia/1/2005 A/cygnus olor/Italy/742/2006 88 A/chicken/Nigeria/641/2006 A/swan/Slovenia/760/2006 83 A/mallard/Italy/835/2006 A/guinea fowl/Shantou/1341/2006 A/Bar-headed Goose/Qinghai/65/2005 100 A/chicken/Manipur/NIV9743/2007 A/chicken/Maharashtra/7979/2006 A/cygnus cygnus/Iran/754/2006 A/chicken/Rawalakot/NARC2441A/2006 82 91 A/chicken/Afghanistan/1207/2006 78 A/whooper swan/Mongolia/2/2006 A/houbara bustard/Saudi Arabia/6732-1/2007 96 A/saker falcon/Kuwait/0286/2007 A/chicken/Assam/140187/2008 73 96 A/chicken/West Bengal/100879/2008 81 A/duck/Tripura/103597/2008 88 A/chicken/West Bengal/155505/2009 A/Bangladesh/207095/2008 89 A/chicken/India/WB-NIV2653/2008 72 A/chicken/West Bengal/82613/2008 83 93 A/chicken/West Bengal/80995/2008 A/chicken/West Bengal/239022/2010* A/chicken/West Bengal/239020/2010* 100 A/chicken/West Bengal/142121/2008 90 95 A/chicken/West Bengal/81010/2008 A/chicken/West Bengal/106181/2008 A/chicken/India/WB-NIV92456/2009 100 A/chicken/West Bengal/170564/2009 A/chicken/Sikkim/151464/2009 93 A/chicken/West Bengal/148713/2008 A/chicken/West Bengal/193936/2009 76 A/chicken/West Bengal/162642/2009 90 0.01 (c)

  4. A/goose/Guangdong/1/1996 A/Indonesia/7/2005 95 A/Indonesia/5/2005 A/Hatay/2004 98 88 A/VietNam/1203/2004 A/HK/212/2003 A/chicken/Manipur/NIV9743/2007 A/guinea fowl/Shantou/1341/2006 A/Bar-headed Goose/Qinghai/65/05 99 A/chicken/Nigeria/1047-8/2006 82 A/duck/Niger/914/2006 A/cygnus olor/Croatia/1/2005 A/chicken/Nigeria/641/2006 A/mallard/Italy/835/2006 A/swan/Slovenia/760/2006 92 A/houbara bustard/Saudi Arabia/6732-1/2007 94 A/saker falcon/Kuwait/0286/2007 A/chicken/Rawalakot/NARC2441A/2006 88 A/chicken/Afghanistan/1207/2006 A/cygnus olor/Italy/742/2006 93 A/cygnus cygnus/Iran/754/2006 82 A/chicken/Maharashtra/7979/2006 A/chicken/Assam/140187/2008 98 A/chicken/West Bengal/100879/2008 89 A/duck/Tripura/103597/2008 A/chicken/West Bengal/155505/2009 A/Bangladesh/207095/2008 99 A/chicken/West Bengal/239022/2010* 100 A/chicken/West Bengal/239020/2010* 77 97 A/chicken/West Bengal/82613/2008 85 A/chicken/West Bengal/80995/2008 A/chicken/India/WB-NIV2653/2008 A/chicken/West Bengal/142121/2008 95 93 A/chicken/West Bengal/81010/2008 A/chicken/West Bengal/106181/2008 76 A/chicken/India/WB-NIV92456/2009 A/chicken/West Bengal/170564/2009 93 A/chicken/Sikkim/151464/2009 71 A/chicken/West Bengal/148713/2008 96 A/chicken/West Bengal/193936/2009 0.01 A/chicken/West Bengal/162642/2009 73 (d)

  5. A/goose/Guangdong/1/1996 A/HK/212/2003 A/Viet Nam/1203/2004 89 A/Indonesia/5/2005 A/Indonesia/7/2005 100 A/chicken/Nigeria/641/2006 A/mallard/Italy/835/2006 96 A/swan/Slovenia/760/2006 A/guinea fowl/Shantou/1341/2006 A/chicken/Nigeria/1047-8/2006 77 A/cygnus olor/Croatia/1/2005 A/duck/Niger/914/2006 A/Bar-headed Goose/Qinghai/65/2005 A/chicken/Manipur/NIV9743/2007 A/cygnus olor/Italy/742/2006 80 A/cygnus cygnus/Iran/754/2006 A/chicken/Maharashtra/7979/2006 70 A/chicken/India/NIV33487/2006 A/chicken/Rawalakot/NARC2441A/2006 75 A/chicken/Afghanistan/1207/2006 A/chicken/Poland/R3248/2007 A/mute swan/Germany/R1349/07 A/houbara bustard/Saudi Arabia/6732-1/2007 A/saker falcon/Kuwait/0286/2007 83 A/duck/Tripura/103597/2008 A/goose/Tripura/103596/2008 A/chicken/Assam/140187/2008 89 A/chicken/West Bengal/100879/2008 A/chicken/West Bengal/155505/2009 A/Bangladesh/207095/2008 70 A/chicken/India/WB-NIV2653/2008 A/chicken/West Bengal/81010/2008 A/chicken/West Bengal/239022/2010* 100 A/chicken/West Bengal/239020/2010* A/chicken/West Bengal/82613/2008 A/chicken/West Bengal/80995/2008 A/chicken/West Bengal/142121/2008 A/chicken/West Bengal/106181/2008 A/chicken/West Bengal/148713/2008 74 A/chicken/West Bengal/162642/2009 A/chicken/Sikkim/151464/2009 A/chicken/West Bengal/170564/2009 A/chicken/India/WB-NIV92456/2009 0.01 A/chicken/West Bengal/193936/2009 (e)

  6. A/goose/Guangdong/1/1996 A/Hong Kong/156/1997 A/VietNam/1203/2004 92 A/Hatay/2004 90 A/Indonesia/5/2005 A/Indonesia/7/2005 100 A/mallard/Italy/835/2006 79 A/swan/Slovenia/760/2006 A/chicken/Nigeria/641/2006 70 A/guinea fowl/Shantou/1341/2006 A/cygnus olor/Croatia/1/2005 A/Bar-headed Goose/Qinghai/65/2005 A/chicken/Manipur/NIV9743/2007 A/chicken/Nigeria/1047-8/2006 90 A/duck/Niger/914/2006 A/chicken/Maharashtra/7979/2006 A/cygnus olor/Italy/742/2006 A/cygnus cygnus/Iran/754/2006 A/chicken/Rawalakot/NARC2441A/2006 A/chicken/Afghanistan/1207/2006 A/common goldeneye/Mongolia/12/2006 A/mute swan/Germany/R1349/2007 A/houbara bustard/Saudi Arabia/6732-1/2007 74 A/saker falcon/Kuwait/0286/2007 A/chicken/West Bengal/80995/2008 76 A/chicken/West Bengal/193936/2009 A/chicken/West Bengal/148713/2008 A/chicken/West Bengal/170564/2009 82 A/chicken/India/WB-NIV92456/2009 A/chicken/West Bengal/162642/2009 A/chicken/Sikkim/151464/2009 A/Bangladesh/207095/2008 A/chicken/West Bengal/155505/2009 84 A/chicken/West Bengal/142121/2008 74 A/chicken/West Bengal/81010/2008 A/chicken/India/WB-NIV2653/2008 A/duck/Tripura/103597/2008 A/chicken/West Bengal/239022/2010* 100 A/chicken/West Bengal/239020/2010* A/chicken/West Bengal/82613/2008 A/chicken/West Bengal/106181/2008 A/chicken/Assam/140187/2008 0.01 A/chicken/West Bengal/100879/2008 (f)

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