1 / 10

Advanced Bioinformatics

Advanced Bioinformatics. BIF-30806. Welcome. Content of the course. Basic Linux Perl scripting Open Bioinformatics Software Protein Motifs Protein Interactions Semantic web. NGS RNA-seq/splicing Comparative genomics Chip-Seq Project. Teachers. Jack Leunissen Harm Nijveen

iokina
Download Presentation

Advanced Bioinformatics

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript


  1. Advanced Bioinformatics BIF-30806

  2. Welcome

  3. Content of the course Basic Linux Perl scripting Open Bioinformatics Software Protein Motifs Protein Interactions Semantic web NGS RNA-seq/splicing Comparative genomics Chip-Seq Project

  4. Teachers Jack Leunissen Harm Nijveen Aalt-Jan van Dijk Edouard Severing Elio Schijlen Felipe Leal Valentim Joachim Bargsten Jose Muino Ke Lin Pierre-Yves Chibon Pjotr Prins Sandra Smit Saulo Alves Aflitos Tom de Man

  5. Grading Exercises(8) + Perl exam 30% Project Report 50% Project Presentation 20% (inter)active participation during lectures and practical sessions is highly appreciated

  6. Hours Mornings: 9 - 12 Afternoon: 13 - 17:15 Coffee/tea breaks as required

  7. Location Lectures: PC 771 Practical sessions and project work: PC 771, G 790, G 794, G 795

  8. Project Create an analysis pipeline using Perl to answer a biological question 2 weeks Small teams of ~4 students One report and presention per student

  9. Perl Introduction to the language Focus on practical use Exercises numbered 1 - 8 should to be mailed before Feb 23 to: harmn@bioinformatics.nl Written exam after one week

  10. Perl Gurus Already a Perl Guru? Then you can skip the Perl classes But: You should hand in the exercise solutions and do the written exam (easy) Overestimation of Perl skills is at your own risk...

More Related