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Overview of caGrid Workflow Infrastructure

Overview of caGrid Workflow Infrastructure. Orchestrating Workflow. Ravi Madduri 1 , Patrick McConnell 2 , Shannon Hastings 3 1 Argonne National Labs 2 Duke Comprehensive Cancer Center 3 Ohio State University. Agenda. caGrid Background Workflow background Demo Discussion.

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Overview of caGrid Workflow Infrastructure

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  1. Overview of caGrid Workflow Infrastructure Orchestrating Workflow Ravi Madduri1, Patrick McConnell2, Shannon Hastings3 1Argonne National Labs2Duke Comprehensive Cancer Center3Ohio State University

  2. Agenda • caGrid Background • Workflow background • Demo • Discussion

  3. caGrid BackgroundcaGrid overview

  4. Workflow DemonstrationScenario 1 caArray caBioconductor query CQL MAGE normalize mageToMicroarraySet mageToStatML MicroarraySet MicroarraySet MicroarrayTranslator mageToMicroarraySet MAGE mageToStatML StatML cluster StatML Cluster cdt gtr atr clusterToTree geWorkbench Cluster cluster ClusterTranslator TreeViewer GenePattern HierarchicalCluster HierarchicalCluster hClusterToTree

  5. Workflow DemonstrationScenario 2 caArray GenePattern query CQL MAGE normalize mageToMicroarraySet mageToStatML MicroarraySet StatML MicroarraySet MicroarrayTranslator mageToMicroarraySet StatML StatML cluster StatML Cluster cdt gtr atr clusterToTree geWorkbench Cluster cluster ClusterTranslator TreeViewer GenePattern HierarchicalCluster HierarchicalCluster hClusterToTree

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