1 / 10

biocatalogue

http://www.biocatalogue.org. Franck Tanoh University of Manchester, UK. ISMB Demo, 01 July 2009. Bottom Line. Public, Curated Catalogue of Life Science Web Services Register, Find, Curate Web Services Community-sourced annotation, expert oversee Open content

jace
Download Presentation

biocatalogue

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. http://www.biocatalogue.org Franck Tanoh University of Manchester, UK ISMB Demo, 01 July 2009

  2. Bottom Line • Public, Curated Catalogue of Life Science Web Services • Register, Find, Curate Web Services • Community-sourced annotation, expert oversee • Open content • Open platform with open REST interfaces • Web 2.0 site and development. • Open source code base. • Started June 2008.

  3. Why? Scientific Workflow Management System Socially share, discover and reuse workflows Service provider

  4. Why? Guessimate 3000+ Web Services in Life Science publicly available Where… can I find them? advertise? What… do they do? Can I use them? How… do they work? operational profile? up to date? Who… provides them? recommends them?

  5. Content • Community contributed • Service providers • Third Parties • Automated crawling • Sourced from partners and registries • Chiefly public services

  6. Curation • Mixed: Free text, Tags, controlled vocabs, community ontologies • Community sourced tags, comments, recommendations • Expert curation ontology-based annotation. myGrid OWL Ontology • Automated WSDL ripping and analytics • Automated monitoring & testing • Partner feeds (e.g. myExperiment) • Update feeds to users

  7. Let’s see Demo

  8. Next? • Public APIs - RESTful APIs to BioCatalogue • Full EMBRACE registry import. • Subscribe to a service - RSS/ATOM feeds for services • Integration with myExperiment • “Try it now” service functionality - Ability to test and play with a service within the BioCatalogue interface before using it. • Integration with Taverna - Ability to import Web Services and annotations to and from BioCatalogue and Taverna. • myBioCatalogue - Ability to set up your own local BioCatalogue registry.BioMoby services support - Register and search for BioMoby services. • Support for DAS services • Curation workbench/tools - New curation tools designed for expert curators. • --- Roadmap: http://www.biocatalogue.org/wiki/doku.php?id=public:roadmap

  9. Who?

  10. Eric Nzuobontane Rodrigo Lopez Credits Thomas Laurent Hamish McWilliams David De Roure Katy Wolstencroft Franck Tanoh Jiten Bhagat Steve Pettifer Robert Stevens Carole Goble

More Related