1 / 9

Algorithm Animation for Bioinformatics Algorithms

Algorithm Animation for Bioinformatics Algorithms. Recap. Gato Bioinformatics and Gato Gato on the Web Gato on the iPad. Gato. Graph Animation Toolbox Features Gred (Graph Editor) – create your own graph Gato Upload graphs and algorithms Step through algorithms Animation

jacie
Download Presentation

Algorithm Animation for Bioinformatics Algorithms

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Algorithm Animation for Bioinformatics Algorithms

  2. Recap • Gato • Bioinformatics and Gato • Gato on the Web • Gato on the iPad

  3. Gato • Graph Animation Toolbox • Features • Gred (Graph Editor) – create your own graph • Gato • Upload graphs and algorithms • Step through algorithms • Animation • Color vertices and edges • Insert and delete labels, edges, and vertices

  4. Bioinformatics and Gato

  5. Phylogenetic Trees : Demo

  6. Ultrametric Tree Problem • Definition : Let D be a symmetric nxn matrix of real numbers. An ultrametric tree for D is a rooted tree T with these properties : • T contains n leaves, each labeled by a unique row of D • Each internal node of D is labeled by one entry from D and has at least two children • Along any path from root to leaf, numbers labeling internal nodes strictly decrease • For any two leaves of i,j of T, D(i,j) is the label of the least common ancestor of i and j in T.

  7. Gato on the Web • Export animation to SVG • Graph(s) • Code • Interactive GUI • Animation history

  8. Gato on iPad

  9. That’s all!

More Related