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Functional Organization of Brachypodium SDH ESTs: Insights from Intron Alignments and Transcript Structure

This study aligns Brachypodium ESTs to predicted sequences, revealing key features such as intron 14 matches and transcription initiation signals. Examine diagram showing exon/intron structure of LKR/SDH bifunctional and SDH monofunctional transcripts. Explore unique exon locations, including the first exon within intron 14.

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Functional Organization of Brachypodium SDH ESTs: Insights from Intron Alignments and Transcript Structure

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  1. Additional File 11 Monofunctional Brachypodium SDH ESTs. (A) Brachypodium ESTs are aligned to the predicted Brachypodium and the wheat LKR/SDH coding sequences. EST sequences matching intron 14 are shown in blue and green. Bases in green are the presumptive transcription initiation signal region. (B) Diagram of exon/intron organization of LKR/SDH bifunctional and SDH monofunctional transcripts. Exons are shown by boxes. The SDH first exon sequence is within the LKR/SDH intron 14 and is shown by the blue box. The green box is the non-transcribed sequence indicated in frame A. Exon numbers are given above (LKR/SDH) and below (SDH) exon boxes.

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