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INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS

INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS. 25-27th of June in Barcelona Coorganised by Infobiomed and Semantic Mining (SM) In collaboration with ACGT and EURESIST Doctoral school on the 25th of June, coordinated by SM Approach: the event will be divided in 2 main blocks:

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INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS

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  1. INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS • 25-27th of June in Barcelona • Coorganised by Infobiomed and Semantic Mining (SM) • In collaboration with ACGT and EURESIST • Doctoral school on the 25th of June, coordinated by SM • Approach: the event will be divided in 2 main blocks: • Doctoral School with the aim of providing pre-doctoral students a forum to present their research projects and receive constructive background from experts and fellows (25th June). • BMI Conference which aims to offer an overview of the networks’ results as well as the hot topics in the field (25-26-27 June).

  2. INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS • Location • PRBB auditorium.

  3. INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS • Symposium Tentative Programme • Topic A. Systems biology insight to human disease and treatment. • Topic B. Biocomputation and knowledge management in drug discovery and development • Topic C. Multi-scale modelling and simulation. • Topic D. Data and knowledge mining in biomedical research. • Topic E. Standards and ontologies in biomedical informatics. • Topic F. Case studies of biomedical informatics applications.

  4. INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS Tentative Schedule • Session format • •(30 minutes) Keynote speaker. • •(30 minutes) Keynote speaker. • •(15 minutes) Invited speaker. • •(15 minutes) Invited speaker. • •(15 minutes) Invited speaker.

  5. TENTATIVE LIST OF SPEAKERS

  6. INTERNATIONAL SYMPOSIUM ON BIOMEDICAL INFORMATICS Organisation of the symposium - Target audience: 150 attendants - No registration fee. Collaborating projects speakers and attendants will cover their expenses from their respective budgets in the projects. - The organising committee will search external funding opportunities/sponsors to cover for the rest of the expenses. Issues - Attendance of Commission representatives, due to coincidence with evaluation period.

  7. PROGRESS SINCE LAST MEETING • TRAINING • 3rd Training Challenge • Paper about the Training Challenge experience • Doctoral school in BMI • Conversion of SoA reports into training materials • MOBILITY • - Mobility programme

  8. INFOBIOMED TRAINING CHALLENGE Third Edition: 2nd to 5th of October in Edinburgh. • Features of the 3rd Edition: • Specific session on multidisciplinary team working • New location • New tutors: Kevin, Baldo, (Montse) • Prize ex-aequo to all participants (15-day exchange award to all participants).

  9. INFOBIOMED TRAINING CHALLENGE • Team 1 • Case Study: Casein Kinase 1 as new target for treatment of leishmaniases • Participants: • Giorgio Cozza (Univ. of Padova – Italy) • Popa Teodora Virginia (Univ. of Iasi – Romania) • Gunes Gundem (Koc University – Turkey) • Joan Planas Iglesias (IMIM – Spain) • Boutaga Khalil (ACTA – The Netherlands) • Team 2 • Case Study: Study of the relevance of different targets for Rheumatoid Arthritis Treatment: TNF-α and MAPK • Participants: • Sara Rodriguez (UEDIN – UK) • Pedro Rafael Sousa Almeida (UAVR – Portugal) • Guillermo López Campos (ISCIII – Spain) • Teresa Fabiola Miscioscia (Univ. of Bari – Italy) • Elena Comandasu (ACTA – The Netherlands)

  10. The Best The Worst What should change - Teamwork - Multidiscipline - Good tutors - Challenge - More time. - Increase the number of participants / groups. - Very tight agenda - The last long night. - Not being able to communicate with others. INFOBIOMED TRAINING CHALLENGE Results of the satisfaction survey • - Overall satisfaction with the Training Challenge (1 to 5 scale ): 4.78 • Methodology of the Training Challenge (1-5 scale / ineffective-effective): • a) Focus on team work: 4,89 • b) Cross-disciplinary approach: 4,67 • c) Number of participants: 4,67 • d) Number of tutors: 4,44

  11. SOME IMAGES OF THE PARTICIPANTS

  12. PAPER ON THE TRAINING CHALLENGE A paper is being written on the experience of the training challenge, to be submitted to the Journal of the American Medical Informatics Association (JAMIA): Training Multidisciplinary Biomedical Informatics Students: Two Years of Experience Erik M. van Mulligen, Montserrat Cases, Kristina Hettne, Eva Molero, Marc Weeber Kevin Roberston, Baldomero Oliva

  13. CONVERSION OF SoA IN TRAINING MATERIALS

  14. CONVERSION OF SoA IN TRAINING MATERIALS • First chapter of D13 has been imported into the Wiki environment. • Issues to be discussed: • Hosting of the Wiki server (FORTH, IMIM?) • Versions available (restricted –with editing rights-, and public). • Wiki – D13 enhancement (feasability, partners involved)

  15. INFOBIOMED MOBILITY • Summary of the mobility activities carried out: • Mobility Funding Mechanism • Training Challenge exchanges:

  16. MOBILITY FUNDING MECHANISM • Status of exchanges funded. Done in 2005 (4) Done in 2006 (3) Planned in 2007 (1) Related to Training Challenge (10) Total number of exchanges: 18

  17. MOBILITY BROKERAGE SERVICE • Dissemination efforts made: • New papers have been • submitted (pending to be • approved)

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