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RESKI

RESKI. miRNA-dependent transcription factor networks miR160 / ARF / GH3  Auxin homeostasis miR1026 / bHLH / DNA methylation Stress adaptation Data : miRNA & gene expression levels, protein levels, auxin uptake, auxin conjugation, DNA methylation - Partners : Timmer/Jansen (in progress)

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RESKI

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  1. RESKI • miRNA-dependent transcription factor networks • miR160 / ARF / GH3  Auxin homeostasis • miR1026 / bHLH / DNA methylation Stress adaptation • Data: miRNA & gene expression levels, protein levels, auxin uptake, auxin conjugation, DNA methylation - Partners: Timmer/Jansen (in progress) • Prediction of non-protein coding genes, regulatory UTR elements and miRNA target – gene interactions • Data: Whole genome and gene models - Partners: Backofen/Krieg/Sinha (in progress) • Prediction of transcription start sites Data: Ilumina sequencing data - Partners: Rensing, Timmer/Kreutz (in progress) • Protein dynamics during abiotic stress • Data: Quantitative proteomics [15N/14N- labelling, Western, and IP]; Network reconstructions (pathway mapping) by integration of transcriptomic, proteomic and metabolomic data –Partners: genedata, Agrisera, Schlosser (in progress) • Correlation analysis to detect post-transcriptional regulation using data mining approaches • Data: Large scale transcript levels (sequencing & microarrays) and proteomics –Partners: genedata, GenXPro, Schlosser, Backofen (in progress)

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