PubMed/Limits and Advanced Search (module 4.2)

1. PubMed/Limits and Advanced Search(module 4.2)

2. MODULE 4.2PubMed/Limits & Advanced Search • Instructions - This part of the: • course is a PowerPoint demonstration intended to introduce you to LIMITS • module is off-line and is intended as an information resource for reference use.

3. Table of Contents • Limits by publication date • Limits by language • Limits by age • Limits by type of article • Limits by text options • Search field tags • Limits by affiliation • Limits by author • Limits by journal • Advanced Searching

4. Logging on to HINARI 1 Before logging into PubMed, we can Login to the HINARI website using the URL http://www.who.int/hinari/

5. Logging into HINARI 2 We will need to enter our HINARI User Name and Password in theappropriate boxes, then click on the Login button. Note: If you do not properly sign on, you will not have access to full text articles.

6. Remember - if you fail to use the Login page, you will have a second option on the Full text journals, databases, and other resources sub-page.

7. Main HINARI webpage Once you are logged in from the main HINARI webpage, access PubMed by clicking on Search HINARI journal articles through PubMed (Medline).

8. From the initial (HINARI) PubMed page, we will click on the Limits search option. Note also the hyperlinks to Advanced search and Help options.

9. Searches can be limited by restricting terms to fields or setting specific dates or record tagging parameters. Prior to January 2010, the Limits was part of the Advanced Search option. We will discuss the Advanced Search tool at the end of the module.

10. In the PubMed Search boxes, we have entered the HIV AND pregnancy search. The results are displayed on this screen – a total of 11348 citations. We will click on the Limits option to look at the choices you have to make this search more precise.

11. In the Published in the Last drop down menu, there are numerous options ranging from Any date (the default) to 10 years and Specify date range. We will click on the 1 year option and then the Search button.

12. By using the 1 year Limits option, we have a search with 488 citations - HIV AND pregnancy . The Limits Activated are highlighted in a yellow box with Change and Remove (hypertext) options.We will click on the Change link and return to Limits.

13. We have clicked on the Reset button. This has the same function as the Remove link on the previous page – it clears all the limits before you begin to assign others. Note: if you do not use the Reset or Remove options, your next search will continue to use the limits you have used – in this case Published in the Last 1 year .

14. We will complete another date search by entering 2008 to 2010 in the Specify date range option and clicking on Search.

15. By using the Publication Date from 2008 to 2010 Limits option, we have a search with 1218 citations – the most current articles on HIV AND pregnancy. We will return to the Limits page by clicking on Change and then clicking on Reset to clear all the Limits.

16. Using the same HIV AND pregnancy search, we now will add a languages limit by checking the English box and then clicking on the Search button. Note: you can click in the boxes of more than one language.

17. By using the English languages Limit option, we have a search with 10188 citations and that is not significantly smaller than the original search. We will click on the Change link and return to the Limits page.

18. Using the same search and retaining the English languages Limit, we will check the boxes of two Ages Limits: Adolescent 13-18 years and Young Adult 19-24 years. Finally, we will click on the Search button. Note the Species, Gender, Subsets Limits options that will not be discussed in this presentation.

19. By using the English languages Limit option and the Adolescent and Young Adult Ages Limits, we have a search with 2259. We will click on the Change link and return to the Limits page.

20. After clicking on the Reset button and clearing all previous Limits, we will click the Type of Article boxes for Practice Guideline and Review and Ages Limits: Adolescent 13-18 years and Young Adult 19-24 years.We then will click on the Search button. Note that you can click on more than 1 Type of Article option.

21. The Limits Activated and Results (268) of this search are listed in the boxes above.

22. We now will discuss the Text Options Limits. We recommend that you DO NOT use these Limits. If you click on Links to free full text, you will eliminate all the HINARI citations that are not also free full text. This will significantly limit your search results.

23. We now will look at the Search Field Tags Limits. After clicking on the Reset button, we will enter WHO in the Search box, click on Affiliation Search Field Tag and the Search button. Note the lengthy list in the drop down menu and all the options you can choose.

24. The WHO Affiliation Limit results in 5176 citations.

25. In the Abstract display, we can see in each result that WHO is listed as part of the Affiliation. We now will return to the Limits page and other Search Field Tags options.

26. After clicking on the Reset box, we will enter nature biotechnology in the Search box, click on Journal Search Field Tag and the Search button.

27. The nature biotechnology Journal Limit results in 6207 citations – all the articles published in this journal. We now will return to the Limits page and use one other Search Field Tags options.

28. After clicking on the Reset box, we will enter ribeiro in the Search box, click on Author Search Field Tag and the Search button.

29. The rebeiro Author Limit results in 6678 citations. We now will look at the Advanced Search page. Note: you also the First Author and Last Author options in the Search Field Tags drop down menu.

30. Reminder: While working with ‘LIMITS”, you probably noticed the Text Options that has ‘Links tofull text, ‘Links tofree full text’ and ‘Abstracts’ options. By clicking on all three options, you would limit your search to all full text articles AND those articles that are available as free full text by various publishers AND those that have abstracts. • Consequently, your HINARI list will be limited to only articles that are both free full text and HINARI – a significantly smaller number.

31. We now will use new Advanced Search option that enables you to use the Search Builder feature. To make searches more precise, you can add terms in all or specific files using the AND, OR, NOT Boolean operators. You can access Advanced Search from the initial PubMed page or the Search Results page. Note the Search Builder instructions that can be displayed.

32. We have added the keyword tuberculosis to the PubMed Search box, activated the Text Word option in Search Builder, added drug resistance to the text box and clicked on the Index option. We will click on AND plus the Add to Search Box option.

33. After clicking on the AND plus the Add to Search Box option, the drug resistance[Text Word] has been added to the PubMed Search box along with tuberculosis. We now will add an additional term.

34. We now will click on the MeSH Terms option in Search Builder and insert the term developing countries into the search box. We then will click on Show Index to display the MeSH terms.

35. The developing country MeSH and MeSH subheading terms are displayed in the drop down menu. We will click on the AND plus the Add to Search Box option to add this term to the PubMed Search box.

36. We now will run the search by clicking on the PubMed Search button. Note that the [Text Word] and [MeSH Terms] we have selected are listed in the PubMed Search box.

37. The results of the tuberculosis AND drug resistance AND developing countries search are 110 citations. Note, in the Filter your results list, that 21 are Free Full Text and 31 are HINARI.

38. We have returned to the Advanced Search page. Note that the Search History has been activated and lists the recently completed search as #1. In Module 4.4, we will discuss the Search History option and how to use it to combine search results.

39. For further information and training on Advanced Search, go to the PubMed Search Clinic: Building a PubMed Search http://www.nlm.nih.gov/bsd/disted/clinics/build.html From this page, you can view a 30 minute clinic recording. It also contains several frequently asked Questions and Answers. Note that this Clinic is for general PubMed not HINARI/PubMed. This is the end of Module 4.2. There is a workbook to accompany this part of module. The workbook will take you through a live session covering topics included in this demonstration with working examples. Updates 2010 07