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DNA REPLICATION

DNA REPLICATION. Animation gone Crazy. DNA Replicates and Replicates. DNA is anti-parallel. Two strands run parallel to each other but with opposite alignments (directions) McGraw-Hill DNA Why is being anti-parallel an advantage to the DNA molecule?. DNA REPLICATION.

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DNA REPLICATION

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  1. DNA REPLICATION

  2. Animation gone Crazy • DNA Replicates and Replicates

  3. DNA is anti-parallel • Two strands run parallel to each other but with opposite alignments (directions) • McGraw-Hill DNA • Why is being anti-parallel an advantage to the DNA molecule?

  4. DNA REPLICATION • Semi-conservative = each one of the parent DNA strands is passed to the daugher DNA + one new strand for each • Semi-conservative DNA (30 secs) SNEAK PREVIEW: DNA REPLICATION PLAYERS(enzyme review)

  5. Fill out DNA Replication Enzymes CHART • Lots of enzymes are needed to start each step

  6. Topoisomerase • Topoisomerase Youtube I and II (1:45) • Topoisomerase Animation (2:16)

  7. Enzyme Helicase:separates(breaking H-bonds) double helix at the replication forkDNA-RNA-Protein (see ani)YOU TUBE DNA replication (1:05)

  8. DNA Helicase • The enzyme is unwinding the chain and breaking the H-bonds between the complementary base pairs (A-T, G-C).

  9. RNA Primer • Nucleotides for the starting point for DNA replication • Short strands of RNA

  10. DNA replication is initiated at many points in eukaryotic chromosomes. • Called Replication Bubbles • They will eventually all meet to form whole replicated strand

  11. DNA Replication Bubble: DNA duplicates in both directions

  12. SSB’s single strand binding proteins • Stabilize the DNA strands as they are being replicated • Prevents rejoining of DNA strands

  13. DNA Polymerases • DNA Polymerase I • Cuts off RNA primers and fills in with DNA (between Okazaki fragments) –lagging strand • Can proofread • DNA Polymerase III • Elongates the strand by adding DNA nucleotides on leading strand • Also proofreads and corrects the DNA strand

  14. Anti-parallel strand builds in the opposite direction (but always in 5’ to 3’ direction)

  15. Leading Strand Lagging Strand • Template strand of DNA • Continuous addition of nitrogenous bases • in 5’ to 3’ direction • McGraw-Hill Replication Fork • Other DNA strand • Forms short strands of Okazaki fragments (that will be joined later) • in the 5’ to 3’ direction • DNA Replication You Tube (1:35)

  16. OKAZAKI FRAGMENTS • The short strands of newly made DNA fragments on the lagging strand are called Okazaki fragments after the Japanese Biochemist Reiji Okazaki.

  17. DNA LIGASEis the enzyme that joins the Okazaki fragments (sugar -phosphate backbone) with covalent bondsDNA REPLICATION (look for ligase) 2:00

  18. SUMMARYDNA Replication (5:45) –shows all the enzymes • Summary Youtube of DNA replication (4:11) • Good explanation of the 5’ to 3’ strands and leading and lagging strands

  19. Includes all your friendly enzymes • DNA Replication (3:56) Great animation

  20. How Fast? • Prokaryotic DNA polymerase can work at about 1000 bases per second. • Eukaryotic DNA polymerase can work at about 50 bases per second.

  21. Animation: DNA Replication • DNA makes DNA • *DNA with enzymes cartoons

  22. McGraw Hill Replication Fork animation

  23. DNA Replication Easy Version (3:11) • DNA Replication Youtube (7:48) • Good CLICK and REVIEW

  24. What if there is a mistake?

  25. DNA Replication ActivityWork in Lab Groups • Card stock papers are original DNA strands • Colored paper are new DNA strands • MAKE OWN ENZYMES-construction paper

  26. Telomeres • At the ends of each chromosome is a protective cap called a telomere. • Each time a cell divides, the telomeres are snipped shorter,

  27. Telomerase • enzyme which adds DNA sequence repeats ("TTAGGG" in all vertebrates) to the 3' end of DNA strands (an overhang) • McGraw Hill Telomeres Animation

  28. Telomeres Added to ends of chromosomesRutgers Telomere Animation

  29. QUIZ • Activity (choose your enzymes and proteins)

  30. MOVIE • Media Showcase (cool animation) • Replication Overview Movie

  31. QUESTION • In this diagram of the process of DNA replication at a replication fork, the strand labeled B is the: • A template strand • B lagging strand • C leading strand • D Okazaki fragment • E RNA primer

  32. QUESTION • In this diagram of the process of DNA replication at a replication fork, the newly synthesized DNA strand labeled C is the: A coding strand • B parental DNA • C leading strand • D lagging strand

  33. ANSWER • C lagging strand • The lagging strand is the newly synthesized DNA where addition of nucleotides is on the end opposite or away from the replication fork.

  34. QUESTION • In this diagram of the process of DNA replication at a replication fork, the black boxes labeled D and E are: • A RNA primers • B DNA template strands • C Okazaki fragments • D DNA polymerase • E Newly synthesized DNA strand

  35. ANSWER • A. RNA primers • The initiation of replication always starts with a short RNA piece. The DNA replicating enzymes will only add nucleotides to the 3' end of DNA.

  36. QUESTION • For the DNA strand 5'-TACGATCATAT-3' the correct complementary DNA strand is: A 3'-TACGATCATAT-5 • 'B 3'-ATGCTAGTATA-5‘ • C 3'-AUGCUAGUAUA-5‘ • D 3'-GCATATACGCG-5‘ • E 3'-TATACTAGCAT-5'

  37. ANSWER • B 3'-ATGCTAGTATA-5'

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