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Observed fragment length distributions. Raw ChIP experiments. PBM TF affinity. Positional Priors, Binding Events , Candidate Motifs. Database integration. Generative model of binding data and sequence. Comparative Genomics. Known motif databases. DNase hyper sensitivity.
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Observed fragment length distributions Raw ChIP experiments PBM TF affinity Positional Priors, Binding Events , Candidate Motifs Database integration Generative model of binding data and sequence Comparative Genomics Known motif databases DNase hyper sensitivity Motifs for refinement Integrated binding site identification platform