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L and D isomers of amino acids. Ionization state as a function of pH. Trans and cis Peptide bonds Trans and cis X-Pro Peptide bonds. Rotation about bonds in a polypeptide. Ramachandran diagram. a- helix. Ferritin, an iron-storage protein. Antiparallel -sheet. A parallel -sheet.
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Trans and cis • Peptide bonds • Trans and cis X-Pro • Peptide bonds
Many sequences can adopt alternative conformations in different proteins.
Misfolding and aggregation • Neurological diseases can be transmitted purely by proteins • Bovine spongiform encephalopathy (mad cow disease) • Creutzfeldt-Jakob disease (CJD) in humans, Scrapie in sheep (Nobel prize in Physiology 1997)
Prion diseases • Transmissible agent consists of aggregated forms of a specific protein. • The protein aggregates are resistant to treatment with agents that degrade most proteins • The protein is lagely or completely derived from a cellular protein, called PrP, that is normally present in brain
The human genome 3 billion nucleotides 24 different chromosomes • Indian muntjak, 3 chromosomes